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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OBGK] soil metagenome; soil
HIT:
9 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274200
OBGK01000330
[OBGK] soil metagenome; soil
149
224
+
Lys
TTT
[ENA]
¢þ
>WENV180274202
OBGK01001696
[OBGK] soil metagenome; soil
150
64
-
Leu
TAA
[ENA]
¢þ
>WENV180274203
OBGK01001720
[OBGK] soil metagenome; soil
152
77
-
Gly
GCC
[ENA]
¢þ
>WENV180274199
OBGK01000280
[OBGK] soil metagenome; soil
190
284
+
SeC
TCA
[ENA]
¢þ
>WENV180274201
OBGK01000549
[OBGK] soil metagenome; soil
195
119
-
Arg
TCT
[ENA]
¢þ
>WENV180274198
OBGK01000185
[OBGK] soil metagenome; soil
265
357
+
Ser
GCT
[ENA]
¢þ
>WENV180274197
OBGK01000006
[OBGK] soil metagenome; soil
4905
4830
-
Asn
GTT
[ENA]
¢þ
>WENV180274195
OBGK01000001
[OBGK] soil metagenome; soil
24754
24828
+
Glu
CTC
[ENA]
¢þ
>WENV180274196
OBGK01000001
[OBGK] soil metagenome; soil
32807
32882
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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