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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBGN] soil metagenome; soil
HIT:
70 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274284
OBGN01000208
[OBGN] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180274270
OBGN01000043
[OBGN] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180274245
OBGN01000018
[OBGN] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180274282
OBGN01000124
[OBGN] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180274246
OBGN01000018
[OBGN] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180274280
OBGN01000107
[OBGN] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180274283
OBGN01000148
[OBGN] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180274281
OBGN01000124
[OBGN] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180274279
OBGN01000067
[OBGN] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180274278
OBGN01000067
[OBGN] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180274277
OBGN01000067
[OBGN] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180274276
OBGN01000067
[OBGN] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180274267
OBGN01000036
[OBGN] soil metagenome; soil
1158
1082
-
Arg
TCT
[ENA]
¢þ
>WENV180274236
OBGN01000009
[OBGN] soil metagenome; soil
2447
2372
-
Asn
GTT
[ENA]
¢þ
>WENV180274275
OBGN01000066
[OBGN] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180274274
OBGN01000066
[OBGN] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180274272
OBGN01000057
[OBGN] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180274230
OBGN01000009
[OBGN] soil metagenome; soil
4196
4271
+
Asn
GTT
[ENA]
¢þ
>WENV180274273
OBGN01000066
[OBGN] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180274260
OBGN01000030
[OBGN] soil metagenome; soil
7510
7436
-
Sup
CTA
[ENA]
¢þ
>WENV180274259
OBGN01000030
[OBGN] soil metagenome; soil
7622
7548
-
Gln
CTG
[ENA]
¢þ
>WENV180274258
OBGN01000030
[OBGN] soil metagenome; soil
7746
7670
-
Met
CAT
[ENA]
¢þ
>WENV180274257
OBGN01000030
[OBGN] soil metagenome; soil
7836
7762
-
Gln
TTG
[ENA]
¢þ
>WENV180274256
OBGN01000030
[OBGN] soil metagenome; soil
7945
7871
-
Gln
TTG
[ENA]
¢þ
>WENV180274255
OBGN01000030
[OBGN] soil metagenome; soil
8053
7969
-
Leu
TAG
[ENA]
¢þ
>WENV180274271
OBGN01000043
[OBGN] soil metagenome; soil
8115
8191
+
Asp
GTC
[ENA]
¢þ
>WENV180274254
OBGN01000030
[OBGN] soil metagenome; soil
8139
8063
-
Met
CAT
[ENA]
¢þ
>WENV180274252
OBGN01000028
[OBGN] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180274269
OBGN01000038
[OBGN] soil metagenome; soil
16711
16627
-
Tyr
GTA
[ENA]
¢þ
>WENV180274268
OBGN01000038
[OBGN] soil metagenome; soil
17005
16921
-
Tyr
GTA
[ENA]
¢þ
>WENV180274235
OBGN01000009
[OBGN] soil metagenome; soil
17749
17674
-
Asn
GTT
[ENA]
¢þ
>WENV180274237
OBGN01000010
[OBGN] soil metagenome; soil
18171
18258
+
Ser
TGA
[ENA]
¢þ
>WENV180274231
OBGN01000009
[OBGN] soil metagenome; soil
18741
18830
+
Ser
CGA
[ENA]
¢þ
>WENV180274240
OBGN01000012
[OBGN] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180274226
OBGN01000007
[OBGN] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180274225
OBGN01000006
[OBGN] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180274247
OBGN01000018
[OBGN] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180274248
OBGN01000018
[OBGN] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180274249
OBGN01000018
[OBGN] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180274250
OBGN01000018
[OBGN] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180274261
OBGN01000031
[OBGN] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180274262
OBGN01000031
[OBGN] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180274263
OBGN01000031
[OBGN] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180274264
OBGN01000031
[OBGN] soil metagenome; soil
42429
42504
+
Val
TAC
[ENA]
¢þ
>WENV180274265
OBGN01000031
[OBGN] soil metagenome; soil
42509
42584
+
Lys
TTT
[ENA]
¢þ
>WENV180274266
OBGN01000031
[OBGN] soil metagenome; soil
42731
42806
+
Lys
TTT
[ENA]
¢þ
>WENV180274253
OBGN01000029
[OBGN] soil metagenome; soil
48385
48461
+
Pro
GGG
[ENA]
¢þ
>WENV180274221
OBGN01000001
[OBGN] soil metagenome; soil
54407
54332
-
Ile2
CAT
[ENA]
¢þ
>WENV180274251
OBGN01000023
[OBGN] soil metagenome; soil
61831
61915
+
Leu
CAA
[ENA]
¢þ
>WENV180274243
OBGN01000015
[OBGN] soil metagenome; soil
64191
64105
-
Leu
CAG
[ENA]
¢þ
>WENV180274242
OBGN01000015
[OBGN] soil metagenome; soil
64312
64226
-
Leu
CAG
[ENA]
¢þ
>WENV180274241
OBGN01000015
[OBGN] soil metagenome; soil
64427
64341
-
Leu
CAG
[ENA]
¢þ
>WENV180274232
OBGN01000009
[OBGN] soil metagenome; soil
70181
70256
+
Gly
GCC
[ENA]
¢þ
>WENV180274233
OBGN01000009
[OBGN] soil metagenome; soil
70311
70384
+
Cys
GCA
[ENA]
¢þ
>WENV180274234
OBGN01000009
[OBGN] soil metagenome; soil
70397
70483
+
Leu
TAA
[ENA]
¢þ
>WENV180274220
OBGN01000001
[OBGN] soil metagenome; soil
86429
86353
-
Arg
ACG
[ENA]
¢þ
>WENV180274219
OBGN01000001
[OBGN] soil metagenome; soil
86704
86628
-
Arg
ACG
[ENA]
¢þ
>WENV180274218
OBGN01000001
[OBGN] soil metagenome; soil
86800
86708
-
Ser
GCT
[ENA]
¢þ
>WENV180274222
OBGN01000002
[OBGN] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180274223
OBGN01000002
[OBGN] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180274244
OBGN01000017
[OBGN] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180274229
OBGN01000008
[OBGN] soil metagenome; soil
105280
105186
-
SeC
TCA
[ENA]
¢þ
>WENV180274238
OBGN01000010
[OBGN] soil metagenome; soil
123912
123999
+
Ser
GGA
[ENA]
¢þ
>WENV180274228
OBGN01000007
[OBGN] soil metagenome; soil
131030
130954
-
fMet
CAT
[ENA]
¢þ
>WENV180274239
OBGN01000012
[OBGN] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
>WENV180274227
OBGN01000007
[OBGN] soil metagenome; soil
134899
134813
-
Leu
GAG
[ENA]
¢þ
>WENV180274224
OBGN01000003
[OBGN] soil metagenome; soil
176138
176212
+
Arg
CCT
[ENA]
¢þ
>WENV180274215
OBGN01000001
[OBGN] soil metagenome; soil
215481
215557
+
fMet
CAT
[ENA]
¢þ
>WENV180274216
OBGN01000001
[OBGN] soil metagenome; soil
215591
215667
+
fMet
CAT
[ENA]
¢þ
>WENV180274217
OBGN01000001
[OBGN] soil metagenome; soil
215701
215777
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK