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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OBGS] soil metagenome; soil
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274316
OBGS01000284
[OBGS] soil metagenome; soil
54
146
+
Ser
GCT
[ENA]
¢þ
>WENV180274324
OBGS01001856
[OBGS] soil metagenome; soil
71
147
+
Val
GAC
[ENA]
¢þ
>WENV180274319
OBGS01000420
[OBGS] soil metagenome; soil
71
157
+
Leu
CAG
[ENA]
¢þ
>WENV180274322
OBGS01001337
[OBGS] soil metagenome; soil
74
1
-
Arg
CCG
[ENA]
¢þ
>WENV180274317
OBGS01000284
[OBGS] soil metagenome; soil
150
226
+
Arg
ACG
[ENA]
¢þ
>WENV180274321
OBGS01001305
[OBGS] soil metagenome; soil
181
256
+
Glu
TTC
[ENA]
¢þ
>WENV180274323
OBGS01001575
[OBGS] soil metagenome; soil
254
168
-
Leu
TAA
[ENA]
¢þ
>WENV180274320
OBGS01000544
[OBGS] soil metagenome; soil
342
268
-
Sup
CTA
[ENA]
¢þ
>WENV180274318
OBGS01000385
[OBGS] soil metagenome; soil
362
287
-
Phe
GAA
[ENA]
¢þ
>WENV180274315
OBGS01000125
[OBGS] soil metagenome; soil
490
415
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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