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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OBGT] soil metagenome; soil
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274335
OBGT01002094
[OBGT] soil metagenome; soil
18
94
+
Met
CAT
[ENA]
¢þ
>WENV180274337
OBGT01002140
[OBGT] soil metagenome; soil
27
114
+
Ser
GGA
[ENA]
¢þ
>WENV180274332
OBGT01001944
[OBGT] soil metagenome; soil
29
105
+
Pro
TGG
[ENA]
¢þ
>WENV180274334
OBGT01002051
[OBGT] soil metagenome; soil
56
129
+
Gly
CCC
[ENA]
¢þ
>WENV180274333
OBGT01001946
[OBGT] soil metagenome; soil
95
9
-
Leu
CAG
[ENA]
¢þ
>WENV180274325
OBGT01000009
[OBGT] soil metagenome; soil
96
171
+
Glu
TTC
[ENA]
¢þ
>WENV180274339
OBGT01002455
[OBGT] soil metagenome; soil
99
24
-
Lys
TTT
[ENA]
¢þ
>WENV180274336
OBGT01002094
[OBGT] soil metagenome; soil
142
216
+
Gln
CTG
[ENA]
¢þ
>WENV180274331
OBGT01001933
[OBGT] soil metagenome; soil
157
243
+
Leu
GAG
[ENA]
¢þ
>WENV180274329
OBGT01001065
[OBGT] soil metagenome; soil
158
83
-
Thr
CGT
[ENA]
¢þ
>WENV180274338
OBGT01002455
[OBGT] soil metagenome; soil
178
103
-
Val
TAC
[ENA]
¢þ
>WENV180274341
OBGT01003861
[OBGT] soil metagenome; soil
200
106
-
SeC
TCA
[ENA]
¢þ
>WENV180274340
OBGT01003311
[OBGT] soil metagenome; soil
216
129
-
Ser
TGA
[ENA]
¢þ
>WENV180274330
OBGT01001148
[OBGT] soil metagenome; soil
253
329
+
Asp
GTC
[ENA]
¢þ
>WENV180274327
OBGT01000124
[OBGT] soil metagenome; soil
358
283
-
Asn
GTT
[ENA]
¢þ
>WENV180274328
OBGT01000440
[OBGT] soil metagenome; soil
376
452
+
Pro
CGG
[ENA]
¢þ
>WENV180274326
OBGT01000011
[OBGT] soil metagenome; soil
1996
2072
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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