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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OBGU] soil metagenome; soil
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274363
OBGU01002969
[OBGU] soil metagenome; soil
29
104
+
Phe
GAA
[ENA]
¢þ
>WENV180274361
OBGU01002807
[OBGU] soil metagenome; soil
35
111
+
Arg
ACG
[ENA]
¢þ
>WENV180274364
OBGU01004459
[OBGU] soil metagenome; soil
48
124
+
Arg
TCT
[ENA]
¢þ
>WENV180274358
OBGU01002756
[OBGU] soil metagenome; soil
54
130
+
Asp
GTC
[ENA]
¢þ
>WENV180274353
OBGU01001770
[OBGU] soil metagenome; soil
65
141
+
Met
CAT
[ENA]
¢þ
>WENV180274366
OBGU01005350
[OBGU] soil metagenome; soil
90
165
+
Lys
TTT
[ENA]
¢þ
>WENV180274365
OBGU01005268
[OBGU] soil metagenome; soil
93
168
+
Glu
TTC
[ENA]
¢þ
>WENV180274351
OBGU01001301
[OBGU] soil metagenome; soil
108
14
-
SeC
TCA
[ENA]
¢þ
>WENV180274359
OBGU01002756
[OBGU] soil metagenome; soil
139
214
+
Trp
CCA
[ENA]
¢þ
>WENV180274360
OBGU01002780
[OBGU] soil metagenome; soil
144
219
+
Ile2
CAT
[ENA]
¢þ
>WENV180274354
OBGU01001770
[OBGU] soil metagenome; soil
151
235
+
Leu
TAG
[ENA]
¢þ
>WENV180274352
OBGU01001652
[OBGU] soil metagenome; soil
161
234
+
Gly
CCC
[ENA]
¢þ
>WENV180274367
OBGU01005445
[OBGU] soil metagenome; soil
177
102
-
Val
TAC
[ENA]
¢þ
>WENV180274362
OBGU01002810
[OBGU] soil metagenome; soil
206
295
+
Ser
CGA
[ENA]
¢þ
>WENV180274356
OBGU01002055
[OBGU] soil metagenome; soil
253
340
+
Ser
GGA
[ENA]
¢þ
>WENV180274355
OBGU01001770
[OBGU] soil metagenome; soil
259
333
+
Gln
TTG
[ENA]
¢þ
>WENV180274357
OBGU01002085
[OBGU] soil metagenome; soil
266
350
+
Tyr
GTA
[ENA]
¢þ
>WENV180274348
OBGU01000104
[OBGU] soil metagenome; soil
306
392
+
Leu
CAG
[ENA]
¢þ
>WENV180274349
OBGU01000104
[OBGU] soil metagenome; soil
435
511
+
Pro
TGG
[ENA]
¢þ
>WENV180274350
OBGU01000539
[OBGU] soil metagenome; soil
577
501
-
Val
GAC
[ENA]
¢þ
>WENV180274347
OBGU01000037
[OBGU] soil metagenome; soil
1103
1028
-
Thr
GGT
[ENA]
¢þ
>WENV180274346
OBGU01000037
[OBGU] soil metagenome; soil
1183
1109
-
Gly
TCC
[ENA]
¢þ
>WENV180274345
OBGU01000008
[OBGU] soil metagenome; soil
4394
4319
-
Ala
TGC
[ENA]
¢þ
>WENV180274344
OBGU01000008
[OBGU] soil metagenome; soil
4513
4437
-
Ile
GAT
[ENA]
¢þ
>WENV180274343
OBGU01000003
[OBGU] soil metagenome; soil
11915
11990
+
Asn
GTT
[ENA]
¢þ
>WENV180274342
OBGU01000002
[OBGU] soil metagenome; soil
32356
32285
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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