This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBGV] soil metagenome; soil
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274438
OBGV01000146
[OBGV] soil metagenome; soil
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV180274420
OBGV01000066
[OBGV] soil metagenome; soil
65
149
+
Leu
TAG
[ENA]
¢þ
>WENV180274408
OBGV01000030
[OBGV] soil metagenome; soil
85
161
+
fMet
CAT
[ENA]
¢þ
>WENV180274416
OBGV01000047
[OBGV] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180274421
OBGV01000066
[OBGV] soil metagenome; soil
173
247
+
Gln
TTG
[ENA]
¢þ
>WENV180274437
OBGV01000132
[OBGV] soil metagenome; soil
175
89
-
Leu
CAG
[ENA]
¢þ
>WENV180274434
OBGV01000099
[OBGV] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180274435
OBGV01000100
[OBGV] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180274436
OBGV01000128
[OBGV] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180274422
OBGV01000066
[OBGV] soil metagenome; soil
282
356
+
Gln
TTG
[ENA]
¢þ
>WENV180274433
OBGV01000099
[OBGV] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180274423
OBGV01000066
[OBGV] soil metagenome; soil
372
448
+
Met
CAT
[ENA]
¢þ
>WENV180274432
OBGV01000070
[OBGV] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180274431
OBGV01000070
[OBGV] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180274424
OBGV01000066
[OBGV] soil metagenome; soil
496
570
+
Gln
CTG
[ENA]
¢þ
>WENV180274425
OBGV01000066
[OBGV] soil metagenome; soil
608
682
+
Sup
CTA
[ENA]
¢þ
>WENV180274430
OBGV01000070
[OBGV] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180274429
OBGV01000070
[OBGV] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180274415
OBGV01000040
[OBGV] soil metagenome; soil
1161
1085
-
Arg
TCT
[ENA]
¢þ
>WENV180274396
OBGV01000011
[OBGV] soil metagenome; soil
1420
1347
-
Gly
CCC
[ENA]
¢þ
>WENV180274428
OBGV01000069
[OBGV] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180274427
OBGV01000069
[OBGV] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180274419
OBGV01000060
[OBGV] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180274392
OBGV01000008
[OBGV] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180274426
OBGV01000069
[OBGV] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180274391
OBGV01000008
[OBGV] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180274417
OBGV01000047
[OBGV] soil metagenome; soil
8115
8191
+
Asp
GTC
[ENA]
¢þ
>WENV180274385
OBGV01000008
[OBGV] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180274418
OBGV01000058
[OBGV] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180274393
OBGV01000009
[OBGV] soil metagenome; soil
18171
18258
+
Ser
TGA
[ENA]
¢þ
>WENV180274390
OBGV01000008
[OBGV] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180274386
OBGV01000008
[OBGV] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180274381
OBGV01000006
[OBGV] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180274373
OBGV01000002
[OBGV] soil metagenome; soil
38186
38111
-
Gly
GCC
[ENA]
¢þ
>WENV180274372
OBGV01000002
[OBGV] soil metagenome; soil
38298
38223
-
Gly
GCC
[ENA]
¢þ
>WENV180274371
OBGV01000002
[OBGV] soil metagenome; soil
38410
38335
-
Gly
GCC
[ENA]
¢þ
>WENV180274409
OBGV01000033
[OBGV] soil metagenome; soil
42281
42356
+
Lys
TTT
[ENA]
¢þ
>WENV180274410
OBGV01000033
[OBGV] soil metagenome; soil
42492
42567
+
Val
TAC
[ENA]
¢þ
>WENV180274411
OBGV01000033
[OBGV] soil metagenome; soil
42572
42647
+
Lys
TTT
[ENA]
¢þ
>WENV180274412
OBGV01000033
[OBGV] soil metagenome; soil
42797
42872
+
Val
TAC
[ENA]
¢þ
>WENV180274413
OBGV01000033
[OBGV] soil metagenome; soil
42877
42952
+
Lys
TTT
[ENA]
¢þ
>WENV180274414
OBGV01000033
[OBGV] soil metagenome; soil
43099
43174
+
Lys
TTT
[ENA]
¢þ
>WENV180274407
OBGV01000029
[OBGV] soil metagenome; soil
48388
48464
+
Pro
GGG
[ENA]
¢þ
>WENV180274405
OBGV01000017
[OBGV] soil metagenome; soil
52478
52402
-
Pro
TGG
[ENA]
¢þ
>WENV180274404
OBGV01000017
[OBGV] soil metagenome; soil
52607
52521
-
Leu
CAG
[ENA]
¢þ
>WENV180274403
OBGV01000017
[OBGV] soil metagenome; soil
52703
52628
-
His
GTG
[ENA]
¢þ
>WENV180274402
OBGV01000017
[OBGV] soil metagenome; soil
52838
52762
-
Arg
CCG
[ENA]
¢þ
>WENV180274406
OBGV01000024
[OBGV] soil metagenome; soil
61882
61966
+
Leu
CAA
[ENA]
¢þ
>WENV180274370
OBGV01000002
[OBGV] soil metagenome; soil
68144
68219
+
Phe
GAA
[ENA]
¢þ
>WENV180274384
OBGV01000007
[OBGV] soil metagenome; soil
68703
68797
+
SeC
TCA
[ENA]
¢þ
>WENV180274387
OBGV01000008
[OBGV] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180274388
OBGV01000008
[OBGV] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180274389
OBGV01000008
[OBGV] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180274399
OBGV01000016
[OBGV] soil metagenome; soil
77628
77544
-
Tyr
GTA
[ENA]
¢þ
>WENV180274398
OBGV01000016
[OBGV] soil metagenome; soil
77922
77838
-
Tyr
GTA
[ENA]
¢þ
>WENV180274401
OBGV01000017
[OBGV] soil metagenome; soil
88256
88181
-
Trp
CCA
[ENA]
¢þ
>WENV180274400
OBGV01000017
[OBGV] soil metagenome; soil
88341
88265
-
Asp
GTC
[ENA]
¢þ
>WENV180274368
OBGV01000001
[OBGV] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180274369
OBGV01000001
[OBGV] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180274397
OBGV01000015
[OBGV] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180274395
OBGV01000011
[OBGV] soil metagenome; soil
112729
112804
+
Phe
GAA
[ENA]
¢þ
>WENV180274394
OBGV01000009
[OBGV] soil metagenome; soil
123912
123999
+
Ser
GGA
[ENA]
¢þ
>WENV180274374
OBGV01000003
[OBGV] soil metagenome; soil
128714
128806
+
Ser
GCT
[ENA]
¢þ
>WENV180274375
OBGV01000003
[OBGV] soil metagenome; soil
128810
128886
+
Arg
ACG
[ENA]
¢þ
>WENV180274376
OBGV01000003
[OBGV] soil metagenome; soil
129085
129161
+
Arg
ACG
[ENA]
¢þ
>WENV180274377
OBGV01000003
[OBGV] soil metagenome; soil
129224
129300
+
Arg
ACG
[ENA]
¢þ
>WENV180274378
OBGV01000003
[OBGV] soil metagenome; soil
129499
129575
+
Arg
ACG
[ENA]
¢þ
>WENV180274383
OBGV01000006
[OBGV] soil metagenome; soil
131030
130954
-
fMet
CAT
[ENA]
¢þ
>WENV180274382
OBGV01000006
[OBGV] soil metagenome; soil
134899
134813
-
Leu
GAG
[ENA]
¢þ
>WENV180274379
OBGV01000003
[OBGV] soil metagenome; soil
161521
161596
+
Ile2
CAT
[ENA]
¢þ
>WENV180274380
OBGV01000005
[OBGV] soil metagenome; soil
176436
176510
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK