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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OBGY] soil metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274461
OBGY01003056
[OBGY] soil metagenome; soil
13
89
+
Asp
GTC
[ENA]
¢þ
>WENV180274450
OBGY01000477
[OBGY] soil metagenome; soil
26
101
+
Trp
CCA
[ENA]
¢þ
>WENV180274459
OBGY01002819
[OBGY] soil metagenome; soil
64
139
+
Gly
GCC
[ENA]
¢þ
>WENV180274455
OBGY01000848
[OBGY] soil metagenome; soil
84
160
+
fMet
CAT
[ENA]
¢þ
>WENV180274458
OBGY01002303
[OBGY] soil metagenome; soil
103
27
-
Met
CAT
[ENA]
¢þ
>WENV180274452
OBGY01000652
[OBGY] soil metagenome; soil
105
30
-
Lys
TTT
[ENA]
¢þ
>WENV180274456
OBGY01000921
[OBGY] soil metagenome; soil
108
32
-
Arg
ACG
[ENA]
¢þ
>WENV180274453
OBGY01000656
[OBGY] soil metagenome; soil
119
44
-
Thr
CGT
[ENA]
¢þ
>WENV180274454
OBGY01000726
[OBGY] soil metagenome; soil
129
53
-
Arg
TCT
[ENA]
¢þ
>WENV180274448
OBGY01000103
[OBGY] soil metagenome; soil
166
82
-
Leu
CAA
[ENA]
¢þ
>WENV180274462
OBGY01003396
[OBGY] soil metagenome; soil
176
90
-
Leu
CAG
[ENA]
¢þ
>WENV180274451
OBGY01000652
[OBGY] soil metagenome; soil
184
109
-
Val
TAC
[ENA]
¢þ
>WENV180274457
OBGY01002303
[OBGY] soil metagenome; soil
193
119
-
Gln
TTG
[ENA]
¢þ
>WENV180274460
OBGY01002985
[OBGY] soil metagenome; soil
209
133
-
Pro
GGG
[ENA]
¢þ
>WENV180274449
OBGY01000178
[OBGY] soil metagenome; soil
211
298
+
Ser
GGA
[ENA]
¢þ
>WENV180274447
OBGY01000003
[OBGY] soil metagenome; soil
1897
1972
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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