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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OBHC] soil metagenome; soil
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274490
OBHC01000298
[OBHC] soil metagenome; soil
17
93
+
Arg
CCG
[ENA]
¢þ
>WENV180274493
OBHC01000330
[OBHC] soil metagenome; soil
79
154
+
Thr
GGT
[ENA]
¢þ
>WENV180274497
OBHC01001553
[OBHC] soil metagenome; soil
126
51
-
Ile2
CAT
[ENA]
¢þ
>WENV180274496
OBHC01001251
[OBHC] soil metagenome; soil
132
206
+
Arg
CCT
[ENA]
¢þ
>WENV180274495
OBHC01000858
[OBHC] soil metagenome; soil
150
225
+
Glu
TTC
[ENA]
¢þ
>WENV180274491
OBHC01000298
[OBHC] soil metagenome; soil
152
227
+
His
GTG
[ENA]
¢þ
>WENV180274499
OBHC01002310
[OBHC] soil metagenome; soil
170
95
-
Ala
GGC
[ENA]
¢þ
>WENV180274494
OBHC01000556
[OBHC] soil metagenome; soil
188
263
+
Phe
GAA
[ENA]
¢þ
>WENV180274498
OBHC01001632
[OBHC] soil metagenome; soil
190
114
-
Arg
ACG
[ENA]
¢þ
>WENV180274492
OBHC01000298
[OBHC] soil metagenome; soil
248
334
+
Leu
CAG
[ENA]
¢þ
>WENV180274489
OBHC01000006
[OBHC] soil metagenome; soil
3389
3314
-
Ala
TGC
[ENA]
¢þ
>WENV180274488
OBHC01000006
[OBHC] soil metagenome; soil
3508
3432
-
Ile
GAT
[ENA]
¢þ
>WENV180274487
OBHC01000001
[OBHC] soil metagenome; soil
10307
10382
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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