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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OBHD] soil metagenome; soil
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274514
OBHD01002162
[OBHD] soil metagenome; soil
6
81
+
Ala
GGC
[ENA]
¢þ
>WENV180274526
OBHD01005932
[OBHD] soil metagenome; soil
83
159
+
Pro
TGG
[ENA]
¢þ
>WENV180274515
OBHD01002341
[OBHD] soil metagenome; soil
91
4
-
Ser
TGA
[ENA]
¢þ
>WENV180274524
OBHD01004021
[OBHD] soil metagenome; soil
96
20
-
Met
CAT
[ENA]
¢þ
>WENV180274525
OBHD01004051
[OBHD] soil metagenome; soil
111
27
-
Tyr
GTA
[ENA]
¢þ
>WENV180274529
OBHD01006158
[OBHD] soil metagenome; soil
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV180274528
OBHD01006157
[OBHD] soil metagenome; soil
166
91
-
Gly
GCC
[ENA]
¢þ
>WENV180274527
OBHD01006154
[OBHD] soil metagenome; soil
175
89
-
Leu
CAG
[ENA]
¢þ
>WENV180274518
OBHD01003465
[OBHD] soil metagenome; soil
182
256
+
Gly
TCC
[ENA]
¢þ
>WENV180274523
OBHD01004021
[OBHD] soil metagenome; soil
186
112
-
Gln
TTG
[ENA]
¢þ
>WENV180274521
OBHD01003634
[OBHD] soil metagenome; soil
207
132
-
Lys
TTT
[ENA]
¢þ
>WENV180274513
OBHD01001756
[OBHD] soil metagenome; soil
207
283
+
Pro
CGG
[ENA]
¢þ
>WENV180274502
OBHD01000064
[OBHD] soil metagenome; soil
244
320
+
Pro
GGG
[ENA]
¢þ
>WENV180274517
OBHD01003015
[OBHD] soil metagenome; soil
262
187
-
Ala
TGC
[ENA]
¢þ
>WENV180274519
OBHD01003465
[OBHD] soil metagenome; soil
262
337
+
Thr
GGT
[ENA]
¢þ
>WENV180274520
OBHD01003634
[OBHD] soil metagenome; soil
287
212
-
Val
TAC
[ENA]
¢þ
>WENV180274522
OBHD01004021
[OBHD] soil metagenome; soil
294
210
-
Leu
TAG
[ENA]
¢þ
>WENV180274510
OBHD01001019
[OBHD] soil metagenome; soil
317
241
-
Arg
ACG
[ENA]
¢þ
>WENV180274516
OBHD01003015
[OBHD] soil metagenome; soil
381
305
-
Ile
GAT
[ENA]
¢þ
>WENV180274511
OBHD01001234
[OBHD] soil metagenome; soil
397
324
-
Gly
CCC
[ENA]
¢þ
>WENV180274509
OBHD01001019
[OBHD] soil metagenome; soil
413
321
-
Ser
GCT
[ENA]
¢þ
>WENV180274507
OBHD01000753
[OBHD] soil metagenome; soil
490
415
-
Ile2
CAT
[ENA]
¢þ
>WENV180274512
OBHD01001327
[OBHD] soil metagenome; soil
587
512
-
Phe
GAA
[ENA]
¢þ
>WENV180274506
OBHD01000736
[OBHD] soil metagenome; soil
725
641
-
Leu
CAA
[ENA]
¢þ
>WENV180274508
OBHD01000929
[OBHD] soil metagenome; soil
791
867
+
Arg
TCT
[ENA]
¢þ
>WENV180274505
OBHD01000650
[OBHD] soil metagenome; soil
804
878
+
Arg
CCT
[ENA]
¢þ
>WENV180274503
OBHD01000248
[OBHD] soil metagenome; soil
1066
1141
+
Asn
GTT
[ENA]
¢þ
>WENV180274504
OBHD01000270
[OBHD] soil metagenome; soil
1266
1190
-
Asp
GTC
[ENA]
¢þ
>WENV180274501
OBHD01000011
[OBHD] soil metagenome; soil
3392
3317
-
Glu
TTC
[ENA]
¢þ
>WENV180274500
OBHD01000005
[OBHD] soil metagenome; soil
5909
5990
+
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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