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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OBHO] metagenome; water
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274907
OBHO01004528
[OBHO] metagenome; water
4
79
+
Phe
GAA
[ENA]
¢þ
>WENV180274917
OBHO01007659
[OBHO] metagenome; water
7
82
+
Glu
TTC
[ENA]
¢þ
>WENV180274923
OBHO01011154
[OBHO] metagenome; water
23
111
+
Ser
TGA
[ENA]
¢þ
>WENV180274934
OBHO01014821
[OBHO] metagenome; water
29
115
+
Leu
TAG
[ENA]
¢þ
>WENV180274892
OBHO01002762
[OBHO] metagenome; water
32
107
+
Ile
GAT
[ENA]
¢þ
>WENV180274915
OBHO01006240
[OBHO] metagenome; water
33
108
+
Thr
TGT
[ENA]
¢þ
>WENV180274902
OBHO01003885
[OBHO] metagenome; water
44
120
+
Arg
ACG
[ENA]
¢þ
>WENV180274897
OBHO01002955
[OBHO] metagenome; water
44
120
+
Val
GAC
[ENA]
¢þ
>WENV180274898
OBHO01003233
[OBHO] metagenome; water
45
120
+
Lys
TTT
[ENA]
¢þ
>WENV180274893
OBHO01002889
[OBHO] metagenome; water
53
126
+
Thr
TGT
[ENA]
¢þ
>WENV180274922
OBHO01010671
[OBHO] metagenome; water
66
141
+
Ala
GGC
[ENA]
¢þ
>WENV180274933
OBHO01013622
[OBHO] metagenome; water
82
156
+
Glu
TTC
[ENA]
¢þ
>WENV180274880
OBHO01001251
[OBHO] metagenome; water
97
21
-
Arg
TCG
[ENA]
¢þ
>WENV180274928
OBHO01012281
[OBHO] metagenome; water
98
173
+
Arg
CCG
[ENA]
¢þ
>WENV180274882
OBHO01001395
[OBHO] metagenome; water
101
195
+
Ser
GCT
[ENA]
¢þ
>WENV180274921
OBHO01009527
[OBHO] metagenome; water
105
21
-
Ser
GCT
[ENA]
¢þ
>WENV180274920
OBHO01007738
[OBHO] metagenome; water
109
23
-
Ser
GGA
[ENA]
¢þ
>WENV180274916
OBHO01006240
[OBHO] metagenome; water
112
197
+
Tyr
GTA
[ENA]
¢þ
>WENV180274918
OBHO01007659
[OBHO] metagenome; water
115
190
+
Val
TAC
[ENA]
¢þ
>WENV180274935
OBHO01015179
[OBHO] metagenome; water
120
195
+
Thr
CGT
[ENA]
¢þ
>WENV180274890
OBHO01002684
[OBHO] metagenome; water
122
45
-
Glu
TTC
[ENA]
¢þ
>WENV180274879
OBHO01000854
[OBHO] metagenome; water
123
37
-
Leu
CAG
[ENA]
¢þ
>WENV180274930
OBHO01012468
[OBHO] metagenome; water
129
54
-
Thr
GGT
[ENA]
¢þ
>WENV180274932
OBHO01012902
[OBHO] metagenome; water
145
71
-
Gly
GCC
[ENA]
¢þ
>WENV180274924
OBHO01011208
[OBHO] metagenome; water
152
228
+
Arg
TCG
[ENA]
¢þ
>WENV180274894
OBHO01002889
[OBHO] metagenome; water
159
236
+
Pro
TGG
[ENA]
¢þ
>WENV180274911
OBHO01005495
[OBHO] metagenome; water
161
84
-
Glu
TTC
[ENA]
¢þ
>WENV180274884
OBHO01001507
[OBHO] metagenome; water
161
85
-
Arg
CCG
[ENA]
¢þ
>WENV180274899
OBHO01003233
[OBHO] metagenome; water
161
236
+
Glu
CTC
[ENA]
¢þ
>WENV180274925
OBHO01011624
[OBHO] metagenome; water
172
96
-
Trp
CCA
[ENA]
¢þ
>WENV180274906
OBHO01004368
[OBHO] metagenome; water
178
252
+
Gln
TTG
[ENA]
¢þ
>WENV180274909
OBHO01005340
[OBHO] metagenome; water
180
104
-
Arg
TCT
[ENA]
¢þ
>WENV180274901
OBHO01003811
[OBHO] metagenome; water
181
96
-
Leu
GAG
[ENA]
¢þ
>WENV180274913
OBHO01006087
[OBHO] metagenome; water
181
104
-
Pro
CGG
[ENA]
¢þ
>WENV180274927
OBHO01012072
[OBHO] metagenome; water
182
88
-
Ser
CGA
[ENA]
¢þ
>WENV180274908
OBHO01005149
[OBHO] metagenome; water
182
258
+
Arg
CCG
[ENA]
¢þ
>WENV180274876
OBHO01000536
[OBHO] metagenome; water
189
116
-
Cys
GCA
[ENA]
¢þ
>WENV180274904
OBHO01004241
[OBHO] metagenome; water
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV180274919
OBHO01007659
[OBHO] metagenome; water
204
280
+
Asp
GTC
[ENA]
¢þ
>WENV180274889
OBHO01002684
[OBHO] metagenome; water
206
130
-
Ile2
CAT
[ENA]
¢þ
>WENV180274912
OBHO01005795
[OBHO] metagenome; water
213
288
+
Gly
GCC
[ENA]
¢þ
>WENV180274926
OBHO01011654
[OBHO] metagenome; water
214
130
-
Leu
CAA
[ENA]
¢þ
>WENV180274903
OBHO01004093
[OBHO] metagenome; water
220
134
-
Leu
GAG
[ENA]
¢þ
>WENV180274914
OBHO01006148
[OBHO] metagenome; water
221
134
-
Leu
TAA
[ENA]
¢þ
>WENV180274929
OBHO01012468
[OBHO] metagenome; water
226
150
-
Gly
TCC
[ENA]
¢þ
>WENV180274905
OBHO01004295
[OBHO] metagenome; water
226
150
-
Pro
TGG
[ENA]
¢þ
>WENV180274931
OBHO01012902
[OBHO] metagenome; water
226
152
-
Cys
GCA
[ENA]
¢þ
>WENV180274910
OBHO01005495
[OBHO] metagenome; water
248
175
-
Gln
CTG
[ENA]
¢þ
>WENV180274891
OBHO01002697
[OBHO] metagenome; water
257
332
+
Ala
GGC
[ENA]
¢þ
>WENV180274895
OBHO01002889
[OBHO] metagenome; water
261
336
+
Tyr
GTA
[ENA]
¢þ
>WENV180274887
OBHO01002212
[OBHO] metagenome; water
293
368
+
Asn
GTT
[ENA]
¢þ
>WENV180274875
OBHO01000501
[OBHO] metagenome; water
303
379
+
fMet
CAT
[ENA]
¢þ
>WENV180274896
OBHO01002889
[OBHO] metagenome; water
339
413
+
Lys
TTT
[ENA]
¢þ
>WENV180274888
OBHO01002684
[OBHO] metagenome; water
340
268
-
Asn
GTT
[ENA]
¢þ
>WENV180274883
OBHO01001395
[OBHO] metagenome; water
352
441
+
Ser
TGA
[ENA]
¢þ
>WENV180274900
OBHO01003695
[OBHO] metagenome; water
386
310
-
Arg
ACG
[ENA]
¢þ
>WENV180274886
OBHO01002092
[OBHO] metagenome; water
389
475
+
Leu
CAA
[ENA]
¢þ
>WENV180274885
OBHO01001956
[OBHO] metagenome; water
435
360
-
His
GTG
[ENA]
¢þ
>WENV180274881
OBHO01001280
[OBHO] metagenome; water
456
383
-
Arg
GCG
[ENA]
¢þ
>WENV180274877
OBHO01000644
[OBHO] metagenome; water
465
538
+
Gly
GCC
[ENA]
¢þ
>WENV180274874
OBHO01000401
[OBHO] metagenome; water
542
617
+
Ile2
CAT
[ENA]
¢þ
>WENV180274878
OBHO01000644
[OBHO] metagenome; water
554
628
+
Gly
TCC
[ENA]
¢þ
>WENV180274870
OBHO01000001
[OBHO] metagenome; water
689
615
-
Ala
TGC
[ENA]
¢þ
>WENV180274873
OBHO01000307
[OBHO] metagenome; water
773
848
+
Val
TAC
[ENA]
¢þ
>WENV180274871
OBHO01000030
[OBHO] metagenome; water
919
844
-
Ala
TGC
[ENA]
¢þ
>WENV180274872
OBHO01000037
[OBHO] metagenome; water
1136
1223
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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