This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBHP] metagenome; freshwater sediment
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274937
OBHP01000655
[OBHP] metagenome; freshwater sediment
14
98
+
Ser
TGA
[ENA]
¢þ
>WENV180274963
OBHP01012721
[OBHP] metagenome; freshwater sediment
36
112
+
Ile
GAT
[ENA]
¢þ
>WENV180274945
OBHP01004817
[OBHP] metagenome; freshwater sediment
37
110
+
Gln
CTG
[ENA]
¢þ
>WENV180274953
OBHP01008987
[OBHP] metagenome; freshwater sediment
41
117
+
Arg
TCG
[ENA]
¢þ
>WENV180274943
OBHP01003749
[OBHP] metagenome; freshwater sediment
45
118
+
Phe
GAA
[ENA]
¢þ
>WENV180274964
OBHP01012725
[OBHP] metagenome; freshwater sediment
50
125
+
Glu
CTC
[ENA]
¢þ
>WENV180274960
OBHP01012108
[OBHP] metagenome; freshwater sediment
60
152
+
Ser
GCT
[ENA]
¢þ
>WENV180274966
OBHP01015495
[OBHP] metagenome; freshwater sediment
62
135
+
Asn
GTT
[ENA]
¢þ
>WENV180274965
OBHP01015353
[OBHP] metagenome; freshwater sediment
75
160
+
Leu
TAA
[ENA]
¢þ
>WENV180274942
OBHP01002989
[OBHP] metagenome; freshwater sediment
85
10
-
Ala
CGC
[ENA]
¢þ
>WENV180274961
OBHP01012220
[OBHP] metagenome; freshwater sediment
89
14
-
Lys
CTT
[ENA]
¢þ
>WENV180274949
OBHP01007159
[OBHP] metagenome; freshwater sediment
92
17
-
Thr
GGT
[ENA]
¢þ
>WENV180274936
OBHP01000449
[OBHP] metagenome; freshwater sediment
96
21
-
Ala
TGC
[ENA]
¢þ
>WENV180274950
OBHP01007716
[OBHP] metagenome; freshwater sediment
99
24
-
Val
GAC
[ENA]
¢þ
>WENV180274947
OBHP01006897
[OBHP] metagenome; freshwater sediment
112
193
+
Leu
GAG
[ENA]
¢þ
>WENV180274959
OBHP01011764
[OBHP] metagenome; freshwater sediment
115
43
-
Arg
CCG
[ENA]
¢þ
>WENV180274952
OBHP01008144
[OBHP] metagenome; freshwater sediment
117
41
-
Val
TAC
[ENA]
¢þ
>WENV180274962
OBHP01012377
[OBHP] metagenome; freshwater sediment
127
202
+
Phe
GAA
[ENA]
¢þ
>WENV180274958
OBHP01009754
[OBHP] metagenome; freshwater sediment
129
53
-
Met
CAT
[ENA]
¢þ
>WENV180274956
OBHP01009408
[OBHP] metagenome; freshwater sediment
132
208
+
Leu
CAA
[ENA]
¢þ
>WENV180274940
OBHP01001480
[OBHP] metagenome; freshwater sediment
137
51
-
Leu
GAG
[ENA]
¢þ
>WENV180274954
OBHP01008987
[OBHP] metagenome; freshwater sediment
143
218
+
His
GTG
[ENA]
¢þ
>WENV180274944
OBHP01003749
[OBHP] metagenome; freshwater sediment
146
218
+
Gly
GCC
[ENA]
¢þ
>WENV180274938
OBHP01000902
[OBHP] metagenome; freshwater sediment
151
240
+
Lys
CTT
[ENA]
¢þ
>WENV180274955
OBHP01009179
[OBHP] metagenome; freshwater sediment
155
82
-
Thr
GGT
[ENA]
¢þ
>WENV180274939
OBHP01001225
[OBHP] metagenome; freshwater sediment
179
83
-
SeC
TCA
[ENA]
¢þ
>WENV180274948
OBHP01007159
[OBHP] metagenome; freshwater sediment
190
116
-
Gly
TCC
[ENA]
¢þ
>WENV180274957
OBHP01009739
[OBHP] metagenome; freshwater sediment
194
117
-
Pro
GGG
[ENA]
¢þ
>WENV180274941
OBHP01002732
[OBHP] metagenome; freshwater sediment
200
128
-
Arg
CCG
[ENA]
¢þ
>WENV180274951
OBHP01008115
[OBHP] metagenome; freshwater sediment
202
126
-
Arg
TCT
[ENA]
¢þ
>WENV180274946
OBHP01004838
[OBHP] metagenome; freshwater sediment
249
177
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK