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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBHR] metagenome; water
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180275040
OBHR01012074
[OBHR] metagenome; water
4
74
+
Gly
GCC
[ENA]
¢þ
>WENV180275065
OBHR01023623
[OBHR] metagenome; water
8
101
+
Asn
GTT
[ENA]
¢þ
>WENV180275062
OBHR01021430
[OBHR] metagenome; water
22
97
+
Pro
GGG
[ENA]
¢þ
>WENV180275038
OBHR01011594
[OBHR] metagenome; water
27
102
+
Glu
TTC
[ENA]
¢þ
>WENV180275048
OBHR01015789
[OBHR] metagenome; water
39
126
+
Ser
GGA
[ENA]
¢þ
>WENV180274984
OBHR01000102
[OBHR] metagenome; water
77
1
-
Arg
CCG
[ENA]
¢þ
>WENV180275067
OBHR01023769
[OBHR] metagenome; water
77
149
+
Ile
TAT
[ENA]
¢þ
>WENV180275043
OBHR01012919
[OBHR] metagenome; water
80
4
-
Met
CAT
[ENA]
¢þ
>WENV180275034
OBHR01008877
[OBHR] metagenome; water
82
5
-
Ile
GAT
[ENA]
¢þ
>WENV180275013
OBHR01003953
[OBHR] metagenome; water
88
13
-
Ala
TGC
[ENA]
¢þ
>WENV180275066
OBHR01023630
[OBHR] metagenome; water
95
6
-
Ser
TGA
[ENA]
¢þ
>WENV180275015
OBHR01003963
[OBHR] metagenome; water
95
167
+
Ala
TGC
[ENA]
¢þ
>WENV180275061
OBHR01020902
[OBHR] metagenome; water
104
33
-
Trp
CCA
[ENA]
¢þ
>WENV180275029
OBHR01007288
[OBHR] metagenome; water
105
30
-
Thr
TGT
[ENA]
¢þ
>WENV180275035
OBHR01009296
[OBHR] metagenome; water
105
30
-
Ala
TGC
[ENA]
¢þ
>WENV180275006
OBHR01002246
[OBHR] metagenome; water
106
34
-
Glu
TTC
[ENA]
¢þ
>WENV180275055
OBHR01017870
[OBHR] metagenome; water
107
182
+
Ala
GGC
[ENA]
¢þ
>WENV180275000
OBHR01000921
[OBHR] metagenome; water
112
37
-
Asn
GTT
[ENA]
¢þ
>WENV180275022
OBHR01005119
[OBHR] metagenome; water
112
194
+
Leu
TAA
[ENA]
¢þ
>WENV180275056
OBHR01017905
[OBHR] metagenome; water
118
191
+
Val
TAC
[ENA]
¢þ
>WENV180274987
OBHR01000112
[OBHR] metagenome; water
119
194
+
Trp
CCA
[ENA]
¢þ
>WENV180275036
OBHR01009645
[OBHR] metagenome; water
124
200
+
fMet
CAT
[ENA]
¢þ
>WENV180274972
OBHR01000017
[OBHR] metagenome; water
129
213
+
Leu
CAA
[ENA]
¢þ
>WENV180275030
OBHR01007750
[OBHR] metagenome; water
130
205
+
Phe
GAA
[ENA]
¢þ
>WENV180275063
OBHR01021761
[OBHR] metagenome; water
131
59
-
Met
CAT
[ENA]
¢þ
>WENV180275058
OBHR01020048
[OBHR] metagenome; water
136
60
-
Arg
TCG
[ENA]
¢þ
>WENV180275050
OBHR01016353
[OBHR] metagenome; water
139
223
+
Leu
GAG
[ENA]
¢þ
>WENV180275027
OBHR01006385
[OBHR] metagenome; water
146
71
-
Ile
AAT
[ENA]
¢þ
>WENV180275041
OBHR01012708
[OBHR] metagenome; water
152
70
-
Leu
TAG
[ENA]
¢þ
>WENV180275049
OBHR01015912
[OBHR] metagenome; water
152
76
-
Val
GAC
[ENA]
¢þ
>WENV180275025
OBHR01006135
[OBHR] metagenome; water
155
74
-
Ser
AGA
[ENA]
¢þ
>WENV180275051
OBHR01016589
[OBHR] metagenome; water
155
83
-
His
GTG
[ENA]
¢þ
>WENV180275057
OBHR01019317
[OBHR] metagenome; water
157
228
+
Pro
TGG
[ENA]
¢þ
>WENV180275053
OBHR01017487
[OBHR] metagenome; water
157
234
+
Lys
CTT
[ENA]
¢þ
>WENV180275039
OBHR01011934
[OBHR] metagenome; water
160
235
+
Arg
CCT
[ENA]
¢þ
>WENV180275033
OBHR01008877
[OBHR] metagenome; water
163
86
-
Asp
GTC
[ENA]
¢þ
>WENV180275004
OBHR01001778
[OBHR] metagenome; water
167
92
-
Thr
GGT
[ENA]
¢þ
>WENV180275059
OBHR01020131
[OBHR] metagenome; water
168
84
-
Tyr
GTA
[ENA]
¢þ
>WENV180275054
OBHR01017735
[OBHR] metagenome; water
168
92
-
Val
TAC
[ENA]
¢þ
>WENV180275037
OBHR01011505
[OBHR] metagenome; water
172
96
-
fMet
CAT
[ENA]
¢þ
>WENV180275060
OBHR01020653
[OBHR] metagenome; water
176
101
-
Pro
TGG
[ENA]
¢þ
>WENV180274998
OBHR01000641
[OBHR] metagenome; water
183
107
-
Asp
GTC
[ENA]
¢þ
>WENV180275023
OBHR01005951
[OBHR] metagenome; water
187
262
+
His
GTG
[ENA]
¢þ
>WENV180275064
OBHR01022505
[OBHR] metagenome; water
190
119
-
Asp
GTC
[ENA]
¢þ
>WENV180275042
OBHR01012803
[OBHR] metagenome; water
193
117
-
Gly
TCC
[ENA]
¢þ
>WENV180275020
OBHR01004901
[OBHR] metagenome; water
198
124
-
Ala
CGC
[ENA]
¢þ
>WENV180275014
OBHR01003955
[OBHR] metagenome; water
202
277
+
Gly
GCC
[ENA]
¢þ
>WENV180275021
OBHR01005116
[OBHR] metagenome; water
210
284
+
Ile
GAT
[ENA]
¢þ
>WENV180275017
OBHR01004445
[OBHR] metagenome; water
214
288
+
Gln
TTG
[ENA]
¢þ
>WENV180275026
OBHR01006378
[OBHR] metagenome; water
217
142
-
Ile
TAT
[ENA]
¢þ
>WENV180274999
OBHR01000863
[OBHR] metagenome; water
218
119
-
SeC
TCA
[ENA]
¢þ
>WENV180275024
OBHR01006101
[OBHR] metagenome; water
218
143
-
Gly
CCC
[ENA]
¢þ
>WENV180275047
OBHR01015693
[OBHR] metagenome; water
227
152
-
Asn
GTT
[ENA]
¢þ
>WENV180275016
OBHR01004320
[OBHR] metagenome; water
228
155
-
Met
CAT
[ENA]
¢þ
>WENV180275052
OBHR01017387
[OBHR] metagenome; water
233
157
-
Glu
TTC
[ENA]
¢þ
>WENV180275045
OBHR01014267
[OBHR] metagenome; water
233
161
-
Phe
GAA
[ENA]
¢þ
>WENV180275019
OBHR01004813
[OBHR] metagenome; water
237
151
-
Leu
CAG
[ENA]
¢þ
>WENV180275032
OBHR01008877
[OBHR] metagenome; water
241
166
-
His
GTG
[ENA]
¢þ
>WENV180275046
OBHR01015008
[OBHR] metagenome; water
246
172
-
Thr
GGT
[ENA]
¢þ
>WENV180275003
OBHR01001778
[OBHR] metagenome; water
256
183
-
Gly
TCC
[ENA]
¢þ
>WENV180275028
OBHR01006531
[OBHR] metagenome; water
260
185
-
Asn
GTT
[ENA]
¢þ
>WENV180275044
OBHR01013014
[OBHR] metagenome; water
263
188
-
Asp
GTC
[ENA]
¢þ
>WENV180274997
OBHR01000641
[OBHR] metagenome; water
275
199
-
Val
TAC
[ENA]
¢þ
>WENV180275012
OBHR01003953
[OBHR] metagenome; water
283
207
-
Ile
GAT
[ENA]
¢þ
>WENV180275031
OBHR01008249
[OBHR] metagenome; water
284
208
-
Arg
GCG
[ENA]
¢þ
>WENV180275007
OBHR01002925
[OBHR] metagenome; water
290
365
+
Lys
TTT
[ENA]
¢þ
>WENV180275010
OBHR01003691
[OBHR] metagenome; water
296
221
-
Trp
CCA
[ENA]
¢þ
>WENV180275008
OBHR01003186
[OBHR] metagenome; water
301
229
-
Cys
GCA
[ENA]
¢þ
>WENV180275011
OBHR01003905
[OBHR] metagenome; water
308
232
-
Pro
GGG
[ENA]
¢þ
>WENV180275018
OBHR01004549
[OBHR] metagenome; water
322
248
-
Val
CAC
[ENA]
¢þ
>WENV180275009
OBHR01003318
[OBHR] metagenome; water
325
401
+
Pro
TGG
[ENA]
¢þ
>WENV180275005
OBHR01001931
[OBHR] metagenome; water
344
268
-
Arg
CCG
[ENA]
¢þ
>WENV180275002
OBHR01001778
[OBHR] metagenome; water
360
276
-
Tyr
GTA
[ENA]
¢þ
>WENV180274996
OBHR01000618
[OBHR] metagenome; water
376
450
+
Glu
TTC
[ENA]
¢þ
>WENV180275001
OBHR01001186
[OBHR] metagenome; water
477
386
-
Ser
GCT
[ENA]
¢þ
>WENV180274994
OBHR01000187
[OBHR] metagenome; water
922
846
-
Met
CAT
[ENA]
¢þ
>WENV180274995
OBHR01000417
[OBHR] metagenome; water
1003
919
-
Leu
CAA
[ENA]
¢þ
>WENV180274991
OBHR01000160
[OBHR] metagenome; water
1185
1259
+
Gln
TTG
[ENA]
¢þ
>WENV180274989
OBHR01000141
[OBHR] metagenome; water
1244
1168
-
Ile2
CAT
[ENA]
¢þ
>WENV180274988
OBHR01000115
[OBHR] metagenome; water
1528
1442
-
Leu
TAA
[ENA]
¢þ
>WENV180274985
OBHR01000103
[OBHR] metagenome; water
1682
1758
+
Ile
GAT
[ENA]
¢þ
>WENV180274990
OBHR01000145
[OBHR] metagenome; water
1751
1826
+
Asn
GTT
[ENA]
¢þ
>WENV180274986
OBHR01000103
[OBHR] metagenome; water
1791
1866
+
Ala
TGC
[ENA]
¢þ
>WENV180274981
OBHR01000077
[OBHR] metagenome; water
2067
1991
-
Glu
TTC
[ENA]
¢þ
>WENV180274980
OBHR01000077
[OBHR] metagenome; water
2222
2148
-
Glu
TTC
[ENA]
¢þ
>WENV180274979
OBHR01000077
[OBHR] metagenome; water
2317
2242
-
Ala
GGC
[ENA]
¢þ
>WENV180274993
OBHR01000168
[OBHR] metagenome; water
2482
2406
-
Asp
GTC
[ENA]
¢þ
>WENV180274992
OBHR01000168
[OBHR] metagenome; water
2570
2495
-
Val
TAC
[ENA]
¢þ
>WENV180274968
OBHR01000005
[OBHR] metagenome; water
3789
3864
+
Lys
TTT
[ENA]
¢þ
>WENV180274983
OBHR01000093
[OBHR] metagenome; water
3967
3891
-
fMet
CAT
[ENA]
¢þ
>WENV180274982
OBHR01000092
[OBHR] metagenome; water
3973
3898
-
Phe
GAA
[ENA]
¢þ
>WENV180274978
OBHR01000060
[OBHR] metagenome; water
5055
4979
-
Arg
CCT
[ENA]
¢þ
>WENV180274976
OBHR01000050
[OBHR] metagenome; water
5612
5537
-
His
GTG
[ENA]
¢þ
>WENV180274975
OBHR01000050
[OBHR] metagenome; water
5697
5621
-
Arg
TCT
[ENA]
¢þ
>WENV180274974
OBHR01000050
[OBHR] metagenome; water
5849
5773
-
Pro
TGG
[ENA]
¢þ
>WENV180274977
OBHR01000056
[OBHR] metagenome; water
5962
6037
+
Thr
TGT
[ENA]
¢þ
>WENV180274973
OBHR01000044
[OBHR] metagenome; water
6452
6367
-
Leu
GAG
[ENA]
¢þ
>WENV180274967
OBHR01000003
[OBHR] metagenome; water
9557
9473
-
Leu
TAG
[ENA]
¢þ
>WENV180274969
OBHR01000013
[OBHR] metagenome; water
9721
9797
+
Arg
ACG
[ENA]
¢þ
>WENV180274970
OBHR01000013
[OBHR] metagenome; water
10485
10560
+
Gly
GCC
[ENA]
¢þ
>WENV180274971
OBHR01000013
[OBHR] metagenome; water
10618
10691
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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