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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBHS] metagenome; freshwater sediment
HIT:
124 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180275148
OBHS01023778
[OBHS] metagenome; freshwater sediment
16
91
+
Glu
TTC
[ENA]
¢þ
>WENV180275174
OBHS01035081
[OBHS] metagenome; freshwater sediment
16
92
+
Arg
TCG
[ENA]
¢þ
>WENV180275187
OBHS01041396
[OBHS] metagenome; freshwater sediment
17
92
+
Val
CAC
[ENA]
¢þ
>WENV180275163
OBHS01031670
[OBHS] metagenome; freshwater sediment
17
106
+
Ser
GCT
[ENA]
¢þ
>WENV180275104
OBHS01006414
[OBHS] metagenome; freshwater sediment
22
98
+
Ile
GAT
[ENA]
¢þ
>WENV180275147
OBHS01023770
[OBHS] metagenome; freshwater sediment
28
103
+
Phe
GAA
[ENA]
¢þ
>WENV180275088
OBHS01003956
[OBHS] metagenome; freshwater sediment
32
105
+
Gln
CTG
[ENA]
¢þ
>WENV180275108
OBHS01008367
[OBHS] metagenome; freshwater sediment
32
108
+
fMet
CAT
[ENA]
¢þ
>WENV180275078
OBHS01001689
[OBHS] metagenome; freshwater sediment
38
111
+
Val
TAC
[ENA]
¢þ
>WENV180275146
OBHS01022995
[OBHS] metagenome; freshwater sediment
38
115
+
His
GTG
[ENA]
¢þ
>WENV180275162
OBHS01031486
[OBHS] metagenome; freshwater sediment
38
125
+
Ser
GGA
[ENA]
¢þ
>WENV180275087
OBHS01003944
[OBHS] metagenome; freshwater sediment
48
124
+
Val
GAC
[ENA]
¢þ
>WENV180275139
OBHS01020394
[OBHS] metagenome; freshwater sediment
50
123
+
Gln
TTG
[ENA]
¢þ
>WENV180275156
OBHS01025730
[OBHS] metagenome; freshwater sediment
50
126
+
His
GTG
[ENA]
¢þ
>WENV180275141
OBHS01022072
[OBHS] metagenome; freshwater sediment
61
132
+
Thr
GGT
[ENA]
¢þ
>WENV180275143
OBHS01022531
[OBHS] metagenome; freshwater sediment
66
139
+
Pro
CGG
[ENA]
¢þ
>WENV180275144
OBHS01022660
[OBHS] metagenome; freshwater sediment
68
144
+
Ile
GAT
[ENA]
¢þ
>WENV180275136
OBHS01018680
[OBHS] metagenome; freshwater sediment
68
149
+
Leu
TAG
[ENA]
¢þ
>WENV180275190
OBHS01042613
[OBHS] metagenome; freshwater sediment
69
143
+
Thr
TGT
[ENA]
¢þ
>WENV180275173
OBHS01034511
[OBHS] metagenome; freshwater sediment
70
146
+
Arg
ACG
[ENA]
¢þ
>WENV180275178
OBHS01037803
[OBHS] metagenome; freshwater sediment
70
159
+
Ser
GGA
[ENA]
¢þ
>WENV180275188
OBHS01041684
[OBHS] metagenome; freshwater sediment
71
146
+
Gly
GCC
[ENA]
¢þ
>WENV180275137
OBHS01019210
[OBHS] metagenome; freshwater sediment
71
167
+
SeC
TCA
[ENA]
¢þ
>WENV180275092
OBHS01004449
[OBHS] metagenome; freshwater sediment
72
1
-
Gly
TCC
[ENA]
¢þ
>WENV180275109
OBHS01008723
[OBHS] metagenome; freshwater sediment
72
148
+
Gln
TTG
[ENA]
¢þ
>WENV180275093
OBHS01004902
[OBHS] metagenome; freshwater sediment
73
149
+
Val
GAC
[ENA]
¢þ
>WENV180275131
OBHS01016565
[OBHS] metagenome; freshwater sediment
77
151
+
His
GTG
[ENA]
¢þ
>WENV180275128
OBHS01015527
[OBHS] metagenome; freshwater sediment
82
172
+
Ser
GCT
[ENA]
¢þ
>WENV180275120
OBHS01011832
[OBHS] metagenome; freshwater sediment
84
8
-
Ile
GAT
[ENA]
¢þ
>WENV180275191
OBHS01042652
[OBHS] metagenome; freshwater sediment
88
13
-
Lys
CTT
[ENA]
¢þ
>WENV180275170
OBHS01033538
[OBHS] metagenome; freshwater sediment
88
164
+
His
GTG
[ENA]
¢þ
>WENV180275135
OBHS01017764
[OBHS] metagenome; freshwater sediment
89
162
+
Phe
GAA
[ENA]
¢þ
>WENV180275172
OBHS01034502
[OBHS] metagenome; freshwater sediment
92
166
+
Arg
ACG
[ENA]
¢þ
>WENV180275130
OBHS01016491
[OBHS] metagenome; freshwater sediment
92
167
+
Lys
CTT
[ENA]
¢þ
>WENV180275074
OBHS01001546
[OBHS] metagenome; freshwater sediment
92
178
+
Leu
TAA
[ENA]
¢þ
>WENV180275100
OBHS01006153
[OBHS] metagenome; freshwater sediment
95
1
-
SeC
TCA
[ENA]
¢þ
>WENV180275186
OBHS01040348
[OBHS] metagenome; freshwater sediment
95
168
+
Arg
CCG
[ENA]
¢þ
>WENV180275180
OBHS01038286
[OBHS] metagenome; freshwater sediment
95
188
+
Ser
GCT
[ENA]
¢þ
>WENV180275142
OBHS01022165
[OBHS] metagenome; freshwater sediment
96
169
+
Met
CAT
[ENA]
¢þ
>WENV180275123
OBHS01012829
[OBHS] metagenome; freshwater sediment
96
169
+
His
GTG
[ENA]
¢þ
>WENV180275129
OBHS01016264
[OBHS] metagenome; freshwater sediment
98
23
-
Lys
TTT
[ENA]
¢þ
>WENV180275189
OBHS01042501
[OBHS] metagenome; freshwater sediment
100
174
+
Arg
TCT
[ENA]
¢þ
>WENV180275167
OBHS01032451
[OBHS] metagenome; freshwater sediment
101
196
+
SeC
TCA
[ENA]
¢þ
>WENV180275138
OBHS01020111
[OBHS] metagenome; freshwater sediment
102
175
+
Gly
GCC
[ENA]
¢þ
>WENV180275154
OBHS01025446
[OBHS] metagenome; freshwater sediment
102
177
+
Ala
TGC
[ENA]
¢þ
>WENV180275166
OBHS01032399
[OBHS] metagenome; freshwater sediment
103
17
-
Ser
GGA
[ENA]
¢þ
>WENV180275102
OBHS01006277
[OBHS] metagenome; freshwater sediment
104
180
+
Met
CAT
[ENA]
¢þ
>WENV180275177
OBHS01036684
[OBHS] metagenome; freshwater sediment
107
31
-
Arg
CCT
[ENA]
¢þ
>WENV180275184
OBHS01039723
[OBHS] metagenome; freshwater sediment
107
35
-
Thr
CGT
[ENA]
¢þ
>WENV180275165
OBHS01032372
[OBHS] metagenome; freshwater sediment
107
190
+
Ser
TGA
[ENA]
¢þ
>WENV180275171
OBHS01033887
[OBHS] metagenome; freshwater sediment
109
25
-
Tyr
GTA
[ENA]
¢þ
>WENV180275089
OBHS01003956
[OBHS] metagenome; freshwater sediment
109
184
+
Glu
CTC
[ENA]
¢þ
>WENV180275115
OBHS01010926
[OBHS] metagenome; freshwater sediment
109
184
+
Gly
TCC
[ENA]
¢þ
>WENV180275160
OBHS01029045
[OBHS] metagenome; freshwater sediment
110
198
+
Ser
GCT
[ENA]
¢þ
>WENV180275168
OBHS01033248
[OBHS] metagenome; freshwater sediment
111
37
-
Thr
TGT
[ENA]
¢þ
>WENV180275079
OBHS01001689
[OBHS] metagenome; freshwater sediment
112
189
+
Asp
GTC
[ENA]
¢þ
>WENV180275175
OBHS01035871
[OBHS] metagenome; freshwater sediment
114
187
+
Val
GAC
[ENA]
¢þ
>WENV180275164
OBHS01032251
[OBHS] metagenome; freshwater sediment
115
188
+
Ala
CGC
[ENA]
¢þ
>WENV180275071
OBHS01000705
[OBHS] metagenome; freshwater sediment
117
34
-
Leu
TAA
[ENA]
¢þ
>WENV180275153
OBHS01024857
[OBHS] metagenome; freshwater sediment
117
42
-
Gly
GCC
[ENA]
¢þ
>WENV180275085
OBHS01003099
[OBHS] metagenome; freshwater sediment
119
42
-
Ile
GAT
[ENA]
¢þ
>WENV180275111
OBHS01008866
[OBHS] metagenome; freshwater sediment
120
46
-
Thr
GGT
[ENA]
¢þ
>WENV180275081
OBHS01002021
[OBHS] metagenome; freshwater sediment
121
40
-
Leu
TAG
[ENA]
¢þ
>WENV180275161
OBHS01029221
[OBHS] metagenome; freshwater sediment
121
194
+
Gln
CTG
[ENA]
¢þ
>WENV180275086
OBHS01003707
[OBHS] metagenome; freshwater sediment
122
44
-
Ile2
CAT
[ENA]
¢þ
>WENV180275134
OBHS01017510
[OBHS] metagenome; freshwater sediment
122
46
-
Ile
GAT
[ENA]
¢þ
>WENV180275179
OBHS01038171
[OBHS] metagenome; freshwater sediment
123
205
+
Tyr
GTA
[ENA]
¢þ
>WENV180275121
OBHS01012364
[OBHS] metagenome; freshwater sediment
124
48
-
Trp
CCA
[ENA]
¢þ
>WENV180275151
OBHS01024228
[OBHS] metagenome; freshwater sediment
124
50
-
Ile
GAT
[ENA]
¢þ
>WENV180275176
OBHS01036127
[OBHS] metagenome; freshwater sediment
124
197
+
Thr
TGT
[ENA]
¢þ
>WENV180275117
OBHS01011252
[OBHS] metagenome; freshwater sediment
125
198
+
Gln
TTG
[ENA]
¢þ
>WENV180275157
OBHS01026435
[OBHS] metagenome; freshwater sediment
130
55
-
Ala
TGC
[ENA]
¢þ
>WENV180275113
OBHS01010341
[OBHS] metagenome; freshwater sediment
133
217
+
Ser
TGA
[ENA]
¢þ
>WENV180275097
OBHS01006030
[OBHS] metagenome; freshwater sediment
135
61
-
Gly
CCC
[ENA]
¢þ
>WENV180275090
OBHS01004018
[OBHS] metagenome; freshwater sediment
136
210
+
Glu
TTC
[ENA]
¢þ
>WENV180275140
OBHS01021415
[OBHS] metagenome; freshwater sediment
137
64
-
Thr
CGT
[ENA]
¢þ
>WENV180275185
OBHS01040161
[OBHS] metagenome; freshwater sediment
139
47
-
Ser
CGA
[ENA]
¢þ
>WENV180275149
OBHS01024172
[OBHS] metagenome; freshwater sediment
139
63
-
Lys
CTT
[ENA]
¢þ
>WENV180275124
OBHS01013398
[OBHS] metagenome; freshwater sediment
140
237
+
SeC
TCA
[ENA]
¢þ
>WENV180275181
OBHS01038369
[OBHS] metagenome; freshwater sediment
143
54
-
Leu
TAA
[ENA]
¢þ
>WENV180275076
OBHS01001617
[OBHS] metagenome; freshwater sediment
145
70
-
Ala
TGC
[ENA]
¢þ
>WENV180275116
OBHS01011104
[OBHS] metagenome; freshwater sediment
147
71
-
Arg
ACG
[ENA]
¢þ
>WENV180275114
OBHS01010476
[OBHS] metagenome; freshwater sediment
153
224
+
Phe
GAA
[ENA]
¢þ
>WENV180275159
OBHS01029035
[OBHS] metagenome; freshwater sediment
158
85
-
Gln
CTG
[ENA]
¢þ
>WENV180275083
OBHS01002171
[OBHS] metagenome; freshwater sediment
167
95
-
Arg
TCT
[ENA]
¢þ
>WENV180275096
OBHS01006000
[OBHS] metagenome; freshwater sediment
170
95
-
His
GTG
[ENA]
¢þ
>WENV180275152
OBHS01024786
[OBHS] metagenome; freshwater sediment
172
77
-
SeC
TCA
[ENA]
¢þ
>WENV180275069
OBHS01000705
[OBHS] metagenome; freshwater sediment
172
243
+
Ala
TGC
[ENA]
¢þ
>WENV180275098
OBHS01006037
[OBHS] metagenome; freshwater sediment
176
248
+
Ile2
CAT
[ENA]
¢þ
>WENV180275118
OBHS01011573
[OBHS] metagenome; freshwater sediment
177
252
+
Val
TAC
[ENA]
¢þ
>WENV180275125
OBHS01013424
[OBHS] metagenome; freshwater sediment
178
105
-
Gln
CTG
[ENA]
¢þ
>WENV180275077
OBHS01001662
[OBHS] metagenome; freshwater sediment
179
255
+
Pro
GGG
[ENA]
¢þ
>WENV180275182
OBHS01039560
[OBHS] metagenome; freshwater sediment
181
111
-
Ala
CGC
[ENA]
¢þ
>WENV180275095
OBHS01005668
[OBHS] metagenome; freshwater sediment
182
256
+
Gly
CCC
[ENA]
¢þ
>WENV180275169
OBHS01033346
[OBHS] metagenome; freshwater sediment
183
100
-
Sup
TCA
[ENA]
¢þ
>WENV180275150
OBHS01024220
[OBHS] metagenome; freshwater sediment
183
103
-
Tyr
GTA
[ENA]
¢þ
>WENV180275101
OBHS01006165
[OBHS] metagenome; freshwater sediment
186
110
-
Pro
CGG
[ENA]
¢þ
>WENV180275155
OBHS01025479
[OBHS] metagenome; freshwater sediment
186
111
-
Thr
GGT
[ENA]
¢þ
>WENV180275145
OBHS01022782
[OBHS] metagenome; freshwater sediment
187
112
-
Thr
GGT
[ENA]
¢þ
>WENV180275107
OBHS01007936
[OBHS] metagenome; freshwater sediment
188
114
-
Pro
GGG
[ENA]
¢þ
>WENV180275080
OBHS01001822
[OBHS] metagenome; freshwater sediment
189
113
-
Pro
GGG
[ENA]
¢þ
>WENV180275122
OBHS01012423
[OBHS] metagenome; freshwater sediment
190
114
-
Arg
TCT
[ENA]
¢þ
>WENV180275127
OBHS01015413
[OBHS] metagenome; freshwater sediment
192
116
-
Arg
ACG
[ENA]
¢þ
>WENV180275183
OBHS01039723
[OBHS] metagenome; freshwater sediment
202
119
-
Leu
GAG
[ENA]
¢þ
>WENV180275106
OBHS01007613
[OBHS] metagenome; freshwater sediment
204
129
-
Pro
CGG
[ENA]
¢þ
>WENV180275133
OBHS01017510
[OBHS] metagenome; freshwater sediment
206
131
-
Ala
TGC
[ENA]
¢þ
>WENV180275119
OBHS01011582
[OBHS] metagenome; freshwater sediment
206
131
-
Thr
GGT
[ENA]
¢þ
>WENV180275084
OBHS01002727
[OBHS] metagenome; freshwater sediment
212
284
+
Ile
TAT
[ENA]
¢þ
>WENV180275158
OBHS01028881
[OBHS] metagenome; freshwater sediment
218
143
-
Ile2
CAT
[ENA]
¢þ
>WENV180275099
OBHS01006153
[OBHS] metagenome; freshwater sediment
218
291
+
Ala
GGC
[ENA]
¢þ
>WENV180275091
OBHS01004449
[OBHS] metagenome; freshwater sediment
223
138
-
Tyr
GTA
[ENA]
¢þ
>WENV180275132
OBHS01016693
[OBHS] metagenome; freshwater sediment
226
151
-
Trp
CCA
[ENA]
¢þ
>WENV180275110
OBHS01008866
[OBHS] metagenome; freshwater sediment
227
154
-
Gly
TCC
[ENA]
¢þ
>WENV180275126
OBHS01014833
[OBHS] metagenome; freshwater sediment
233
160
-
Arg
TCG
[ENA]
¢þ
>WENV180275072
OBHS01001177
[OBHS] metagenome; freshwater sediment
252
177
-
Ala
CGC
[ENA]
¢þ
>WENV180275103
OBHS01006378
[OBHS] metagenome; freshwater sediment
255
179
-
Ile
GAT
[ENA]
¢þ
>WENV180275112
OBHS01010253
[OBHS] metagenome; freshwater sediment
261
189
-
Phe
GAA
[ENA]
¢þ
>WENV180275068
OBHS01000127
[OBHS] metagenome; freshwater sediment
264
339
+
Pro
TGG
[ENA]
¢þ
>WENV180275073
OBHS01001273
[OBHS] metagenome; freshwater sediment
266
192
-
Gly
CCC
[ENA]
¢þ
>WENV180275094
OBHS01005234
[OBHS] metagenome; freshwater sediment
277
206
-
Gly
TCC
[ENA]
¢þ
>WENV180275075
OBHS01001617
[OBHS] metagenome; freshwater sediment
278
202
-
Ile
GAT
[ENA]
¢þ
>WENV180275082
OBHS01002171
[OBHS] metagenome; freshwater sediment
280
209
-
Val
TAC
[ENA]
¢þ
>WENV180275105
OBHS01007112
[OBHS] metagenome; freshwater sediment
282
208
-
Cys
GCA
[ENA]
¢þ
>WENV180275070
OBHS01000705
[OBHS] metagenome; freshwater sediment
365
289
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK