Home | tRNADB-CE : tRNA gene database curated manually by experts

This is the navigation skips to jump to main contents

Jump to main contents.

Top | Keyword | BLAST | Download | HOW TO USE

tRNA gene List

[OBIE] soil metagenome; soil

HIT: 56 sequence(s).

Download Sequence
View ClustalW result

The reliable tRNA genes	All candidate tRNA genes

Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
	>WENV180286117	OBIE01000279	[OBIE] soil metagenome; soil		62	137	+	Thr	GGT	[ENA]	◯
	>WENV180286084	OBIE01000027	[OBIE] soil metagenome; soil		83	169	+	Leu	CAG	[ENA]	◯
	>WENV180286116	OBIE01000269	[OBIE] soil metagenome; soil		130	56	-	Gln	TTG	[ENA]	◯
	>WENV180286069	OBIE01000004	[OBIE] soil metagenome; soil		149	57	-	Ser	GCT	[ENA]	◯
	>WENV180286101	OBIE01000043	[OBIE] soil metagenome; soil		149	74	-	His	GTG	[ENA]	◯
	>WENV180286118	OBIE01000280	[OBIE] soil metagenome; soil		155	71	-	Leu	TAG	[ENA]	◯
	>WENV180286114	OBIE01000154	[OBIE] soil metagenome; soil		192	117	-	Ala	TGC	[ENA]	◯
	>WENV180286115	OBIE01000155	[OBIE] soil metagenome; soil		202	127	-	Glu	TTC	[ENA]	◯
	>WENV180286085	OBIE01000027	[OBIE] soil metagenome; soil		204	290	+	Leu	CAG	[ENA]	◯
	>WENV180286100	OBIE01000043	[OBIE] soil metagenome; soil		284	208	-	Arg	CCG	[ENA]	◯
	>WENV180286113	OBIE01000154	[OBIE] soil metagenome; soil		311	235	-	Ile	GAT	[ENA]	◯
	>WENV180286086	OBIE01000027	[OBIE] soil metagenome; soil		333	409	+	Pro	TGG	[ENA]	◯
	>WENV180286112	OBIE01000097	[OBIE] soil metagenome; soil		381	306	-	Thr	GGT	[ENA]	◯
	>WENV180286111	OBIE01000097	[OBIE] soil metagenome; soil		461	387	-	Gly	TCC	[ENA]	◯
	>WENV180286110	OBIE01000097	[OBIE] soil metagenome; soil		662	578	-	Tyr	GTA	[ENA]	◯
	>WENV180286109	OBIE01000097	[OBIE] soil metagenome; soil		746	671	-	Thr	TGT	[ENA]	◯
	>WENV180286078	OBIE01000015	[OBIE] soil metagenome; soil		1178	1102	-	Arg	TCT	[ENA]	◯
	>WENV180286092	OBIE01000041	[OBIE] soil metagenome; soil		1421	1348	-	Gly	CCC	[ENA]	◯
	>WENV180286088	OBIE01000032	[OBIE] soil metagenome; soil		1831	1747	-	Leu	CAA	[ENA]	◯
	>WENV180286107	OBIE01000093	[OBIE] soil metagenome; soil		2554	2479	-	Ala	GGC	[ENA]	◯
	>WENV180286108	OBIE01000094	[OBIE] soil metagenome; soil		3292	3367	+	Thr	CGT	[ENA]	◯
	>WENV180286090	OBIE01000035	[OBIE] soil metagenome; soil		8936	8861	-	Ile2	CAT	[ENA]	◯
	>WENV180286106	OBIE01000075	[OBIE] soil metagenome; soil		10756	10669	-	Ser	GGA	[ENA]	◯
	>WENV180286105	OBIE01000072	[OBIE] soil metagenome; soil		11963	12039	+	Pro	CGG	[ENA]	◯
	>WENV180286097	OBIE01000042	[OBIE] soil metagenome; soil		13436	13347	-	Ser	CGA	[ENA]	◯
	>WENV180286093	OBIE01000042	[OBIE] soil metagenome; soil		14428	14503	+	Asn	GTT	[ENA]	◯
	>WENV180286091	OBIE01000038	[OBIE] soil metagenome; soil		17246	17162	-	Tyr	GTA	[ENA]	◯
	>WENV180286102	OBIE01000046	[OBIE] soil metagenome; soil		24739	24815	+	Met	CAT	[ENA]	◯
	>WENV180286103	OBIE01000046	[OBIE] soil metagenome; soil		24863	24937	+	Gln	CTG	[ENA]	◯
	>WENV180286104	OBIE01000046	[OBIE] soil metagenome; soil		24975	25049	+	Sup	CTA	[ENA]	◯
	>WENV180286096	OBIE01000042	[OBIE] soil metagenome; soil		27981	27906	-	Asn	GTT	[ENA]	◯
	>WENV180286065	OBIE01000003	[OBIE] soil metagenome; soil		28226	28301	+	Ile2	CAT	[ENA]	◯
	>WENV180286094	OBIE01000042	[OBIE] soil metagenome; soil		29730	29805	+	Asn	GTT	[ENA]	◯
	>WENV180286095	OBIE01000042	[OBIE] soil metagenome; soil		32139	32214	+	Asn	GTT	[ENA]	◯
	>WENV180286099	OBIE01000043	[OBIE] soil metagenome; soil		35702	35627	-	Trp	CCA	[ENA]	◯
	>WENV180286098	OBIE01000043	[OBIE] soil metagenome; soil		35787	35711	-	Asp	GTC	[ENA]	◯
	>WENV180286077	OBIE01000014	[OBIE] soil metagenome; soil		36443	36368	-	Phe	GAA	[ENA]	◯
	>WENV180286063	OBIE01000001	[OBIE] soil metagenome; soil		37773	37849	+	Val	GAC	[ENA]	◯
	>WENV180286064	OBIE01000001	[OBIE] soil metagenome; soil		37854	37930	+	Val	GAC	[ENA]	◯
	>WENV180286079	OBIE01000017	[OBIE] soil metagenome; soil		37969	38044	+	Gly	GCC	[ENA]	◯
	>WENV180286080	OBIE01000017	[OBIE] soil metagenome; soil		38099	38172	+	Cys	GCA	[ENA]	◯
	>WENV180286081	OBIE01000017	[OBIE] soil metagenome; soil		38185	38271	+	Leu	TAA	[ENA]	◯
	>WENV180286089	OBIE01000035	[OBIE] soil metagenome; soil		40958	40882	-	Arg	ACG	[ENA]	◯
	>WENV180286083	OBIE01000022	[OBIE] soil metagenome; soil		48019	47945	-	Arg	CCT	[ENA]	◯
	>WENV180286087	OBIE01000030	[OBIE] soil metagenome; soil		48388	48464	+	Pro	GGG	[ENA]	◯
	>WENV180286075	OBIE01000014	[OBIE] soil metagenome; soil		66177	66252	+	Gly	GCC	[ENA]	◯
	>WENV180286076	OBIE01000014	[OBIE] soil metagenome; soil		66289	66364	+	Gly	GCC	[ENA]	◯
	>WENV180286082	OBIE01000019	[OBIE] soil metagenome; soil		76585	76660	+	Phe	GAA	[ENA]	◯
	>WENV180286074	OBIE01000010	[OBIE] soil metagenome; soil		96165	96078	-	Ser	TGA	[ENA]	◯
	>WENV180286070	OBIE01000005	[OBIE] soil metagenome; soil		105260	105166	-	SeC	TCA	[ENA]	◯
	>WENV180286068	OBIE01000004	[OBIE] soil metagenome; soil		128830	128906	+	fMet	CAT	[ENA]	◯
	>WENV180286067	OBIE01000003	[OBIE] soil metagenome; soil		130691	130615	-	fMet	CAT	[ENA]	◯
	>WENV180286073	OBIE01000006	[OBIE] soil metagenome; soil		133522	133447	-	Lys	TTT	[ENA]	◯
	>WENV180286072	OBIE01000006	[OBIE] soil metagenome; soil		133602	133527	-	Val	TAC	[ENA]	◯
	>WENV180286071	OBIE01000006	[OBIE] soil metagenome; soil		133813	133738	-	Lys	TTT	[ENA]	◯
	>WENV180286066	OBIE01000003	[OBIE] soil metagenome; soil		134560	134474	-	Leu	GAG	[ENA]	◯
Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision

Download Sequence
View ClustalW result

BACK