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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OBIF] soil metagenome; soil
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180286149
OBIF01005673
[OBIF] soil metagenome; soil
1
77
+
Arg
TCT
[ENA]
¢þ
>WENV180286139
OBIF01003193
[OBIF] soil metagenome; soil
21
107
+
Leu
CAG
[ENA]
¢þ
>WENV180286129
OBIF01001181
[OBIF] soil metagenome; soil
62
137
+
Trp
CCA
[ENA]
¢þ
>WENV180286142
OBIF01003984
[OBIF] soil metagenome; soil
63
139
+
fMet
CAT
[ENA]
¢þ
>WENV180286121
OBIF01000007
[OBIF] soil metagenome; soil
81
5
-
Asp
GTC
[ENA]
¢þ
>WENV180286135
OBIF01002619
[OBIF] soil metagenome; soil
120
212
+
Ser
GCT
[ENA]
¢þ
>WENV180286148
OBIF01005637
[OBIF] soil metagenome; soil
125
201
+
Asp
GTC
[ENA]
¢þ
>WENV180286147
OBIF01005242
[OBIF] soil metagenome; soil
129
43
-
Leu
TAA
[ENA]
¢þ
>WENV180286140
OBIF01003238
[OBIF] soil metagenome; soil
131
56
-
Lys
TTT
[ENA]
¢þ
>WENV180286144
OBIF01004213
[OBIF] soil metagenome; soil
138
212
+
Arg
CCT
[ENA]
¢þ
>WENV180286137
OBIF01002690
[OBIF] soil metagenome; soil
162
237
+
Asn
GTT
[ENA]
¢þ
>WENV180286130
OBIF01001676
[OBIF] soil metagenome; soil
166
80
-
Leu
GAG
[ENA]
¢þ
>WENV180286132
OBIF01001903
[OBIF] soil metagenome; soil
166
92
-
Gln
CTG
[ENA]
¢þ
>WENV180286141
OBIF01003580
[OBIF] soil metagenome; soil
171
247
+
Arg
CCG
[ENA]
¢þ
>WENV180286145
OBIF01005072
[OBIF] soil metagenome; soil
176
251
+
Val
TAC
[ENA]
¢þ
>WENV180286143
OBIF01004172
[OBIF] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180286133
OBIF01002090
[OBIF] soil metagenome; soil
209
134
-
Ile2
CAT
[ENA]
¢þ
>WENV180286146
OBIF01005242
[OBIF] soil metagenome; soil
215
142
-
Cys
GCA
[ENA]
¢þ
>WENV180286136
OBIF01002619
[OBIF] soil metagenome; soil
216
292
+
Arg
ACG
[ENA]
¢þ
>WENV180286126
OBIF01000607
[OBIF] soil metagenome; soil
235
160
-
Thr
GGT
[ENA]
¢þ
>WENV180286131
OBIF01001903
[OBIF] soil metagenome; soil
290
214
-
Met
CAT
[ENA]
¢þ
>WENV180286125
OBIF01000607
[OBIF] soil metagenome; soil
315
241
-
Gly
TCC
[ENA]
¢þ
>WENV180286138
OBIF01002910
[OBIF] soil metagenome; soil
397
310
-
Ser
GGA
[ENA]
¢þ
>WENV180286134
OBIF01002503
[OBIF] soil metagenome; soil
404
329
-
Gly
GCC
[ENA]
¢þ
>WENV180286128
OBIF01000884
[OBIF] soil metagenome; soil
479
554
+
Phe
GAA
[ENA]
¢þ
>WENV180286124
OBIF01000607
[OBIF] soil metagenome; soil
516
432
-
Tyr
GTA
[ENA]
¢þ
>WENV180286123
OBIF01000607
[OBIF] soil metagenome; soil
600
525
-
Thr
TGT
[ENA]
¢þ
>WENV180286127
OBIF01000861
[OBIF] soil metagenome; soil
758
671
-
Ser
TGA
[ENA]
¢þ
>WENV180286122
OBIF01000096
[OBIF] soil metagenome; soil
1646
1570
-
Pro
TGG
[ENA]
¢þ
>WENV180286120
OBIF01000007
[OBIF] soil metagenome; soil
3508
3433
-
Ala
TGC
[ENA]
¢þ
>WENV180286119
OBIF01000007
[OBIF] soil metagenome; soil
3627
3551
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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