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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBIG] metagenome; freshwater sediment
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180286175
OBIG01008947
[OBIG] metagenome; freshwater sediment
24
97
+
Gln
CTG
[ENA]
¢þ
>WENV180286184
OBIG01012815
[OBIG] metagenome; freshwater sediment
24
108
+
Leu
TAG
[ENA]
¢þ
>WENV180286186
OBIG01013480
[OBIG] metagenome; freshwater sediment
32
108
+
Lys
CTT
[ENA]
¢þ
>WENV180286192
OBIG01015975
[OBIG] metagenome; freshwater sediment
35
108
+
Gln
CTG
[ENA]
¢þ
>WENV180286165
OBIG01005077
[OBIG] metagenome; freshwater sediment
36
109
+
Ala
CGC
[ENA]
¢þ
>WENV180286156
OBIG01001555
[OBIG] metagenome; freshwater sediment
46
120
+
Gly
CCC
[ENA]
¢þ
>WENV180286178
OBIG01010540
[OBIG] metagenome; freshwater sediment
47
144
+
SeC
TCA
[ENA]
¢þ
>WENV180286176
OBIG01009612
[OBIG] metagenome; freshwater sediment
50
134
+
Leu
GAG
[ENA]
¢þ
>WENV180286171
OBIG01006891
[OBIG] metagenome; freshwater sediment
51
128
+
Ile
GAT
[ENA]
¢þ
>WENV180286183
OBIG01011912
[OBIG] metagenome; freshwater sediment
72
-1
-
Trp
CCA
[ENA]
¢þ
>WENV180286167
OBIG01005583
[OBIG] metagenome; freshwater sediment
72
156
+
Tyr
GTA
[ENA]
¢þ
>WENV180286191
OBIG01014877
[OBIG] metagenome; freshwater sediment
79
154
+
His
GTG
[ENA]
¢þ
>WENV180286193
OBIG01016135
[OBIG] metagenome; freshwater sediment
86
160
+
Thr
GGT
[ENA]
¢þ
>WENV180286154
OBIG01001089
[OBIG] metagenome; freshwater sediment
92
19
-
Ile
GAT
[ENA]
¢þ
>WENV180286190
OBIG01014465
[OBIG] metagenome; freshwater sediment
95
10
-
Leu
TAA
[ENA]
¢þ
>WENV180286173
OBIG01008203
[OBIG] metagenome; freshwater sediment
104
30
-
Ile2
CAT
[ENA]
¢þ
>WENV180286166
OBIG01005312
[OBIG] metagenome; freshwater sediment
105
180
+
Ile2
CAT
[ENA]
¢þ
>WENV180286174
OBIG01008443
[OBIG] metagenome; freshwater sediment
106
30
-
Arg
GCG
[ENA]
¢þ
>WENV180286196
OBIG01017576
[OBIG] metagenome; freshwater sediment
109
14
-
Ile
TAT
[ENA]
¢þ
>WENV180286182
OBIG01011548
[OBIG] metagenome; freshwater sediment
110
34
-
Asp
GTC
[ENA]
¢þ
>WENV180286170
OBIG01006745
[OBIG] metagenome; freshwater sediment
111
36
-
Thr
TGT
[ENA]
¢þ
>WENV180286189
OBIG01014153
[OBIG] metagenome; freshwater sediment
112
187
+
Ala
CGC
[ENA]
¢þ
>WENV180286194
OBIG01016293
[OBIG] metagenome; freshwater sediment
117
42
-
Asn
GTT
[ENA]
¢þ
>WENV180286159
OBIG01001709
[OBIG] metagenome; freshwater sediment
117
43
-
Ile2
CAT
[ENA]
¢þ
>WENV180286152
OBIG01000906
[OBIG] metagenome; freshwater sediment
120
45
-
Glu
CTC
[ENA]
¢þ
>WENV180286177
OBIG01009854
[OBIG] metagenome; freshwater sediment
127
52
-
Ala
CGC
[ENA]
¢þ
>WENV180286187
OBIG01013583
[OBIG] metagenome; freshwater sediment
130
58
-
Gly
TCC
[ENA]
¢þ
>WENV180286180
OBIG01011096
[OBIG] metagenome; freshwater sediment
130
219
+
Ser
CGA
[ENA]
¢þ
>WENV180286169
OBIG01005590
[OBIG] metagenome; freshwater sediment
132
60
-
Lys
TTT
[ENA]
¢þ
>WENV180286157
OBIG01001695
[OBIG] metagenome; freshwater sediment
133
208
+
Lys
TTT
[ENA]
¢þ
>WENV180286185
OBIG01012876
[OBIG] metagenome; freshwater sediment
135
209
+
Val
CAC
[ENA]
¢þ
>WENV180286179
OBIG01010819
[OBIG] metagenome; freshwater sediment
138
65
-
Thr
GGT
[ENA]
¢þ
>WENV180286181
OBIG01011103
[OBIG] metagenome; freshwater sediment
139
56
-
Leu
TAG
[ENA]
¢þ
>WENV180286168
OBIG01005588
[OBIG] metagenome; freshwater sediment
140
214
+
Trp
CCA
[ENA]
¢þ
>WENV180286188
OBIG01013894
[OBIG] metagenome; freshwater sediment
148
74
-
Glu
CTC
[ENA]
¢þ
>WENV180286172
OBIG01006891
[OBIG] metagenome; freshwater sediment
154
229
+
Ala
TGC
[ENA]
¢þ
>WENV180286161
OBIG01002086
[OBIG] metagenome; freshwater sediment
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV180286164
OBIG01004634
[OBIG] metagenome; freshwater sediment
164
239
+
Gly
GCC
[ENA]
¢þ
>WENV180286153
OBIG01001025
[OBIG] metagenome; freshwater sediment
179
104
-
Val
TAC
[ENA]
¢þ
>WENV180286163
OBIG01002486
[OBIG] metagenome; freshwater sediment
187
115
-
Ile2
CAT
[ENA]
¢þ
>WENV180286195
OBIG01017576
[OBIG] metagenome; freshwater sediment
192
118
-
Ile2
CAT
[ENA]
¢þ
>WENV180286151
OBIG01000906
[OBIG] metagenome; freshwater sediment
198
125
-
Gln
CTG
[ENA]
¢þ
>WENV180286158
OBIG01001695
[OBIG] metagenome; freshwater sediment
217
294
+
Glu
TTC
[ENA]
¢þ
>WENV180286155
OBIG01001378
[OBIG] metagenome; freshwater sediment
230
149
-
Leu
TAG
[ENA]
¢þ
>WENV180286150
OBIG01000529
[OBIG] metagenome; freshwater sediment
230
156
-
Val
CAC
[ENA]
¢þ
>WENV180286160
OBIG01002086
[OBIG] metagenome; freshwater sediment
246
172
-
Thr
TGT
[ENA]
¢þ
>WENV180286162
OBIG01002486
[OBIG] metagenome; freshwater sediment
274
202
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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