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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OBIN] human gut metagenome; human gut
HIT:
77 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180289180
OBIN01009337
[OBIN] human gut metagenome; human gut
49
121
+
Phe
GAA
[ENA]
¢þ
>WENV180289179
OBIN01008460
[OBIN] human gut metagenome; human gut
67
143
+
Ile
GAT
[ENA]
¢þ
>WENV180289161
OBIN01001664
[OBIN] human gut metagenome; human gut
78
6
-
Arg
TCT
[ENA]
¢þ
>WENV180289178
OBIN01006571
[OBIN] human gut metagenome; human gut
79
154
+
Asn
GTT
[ENA]
¢þ
>WENV180289157
OBIN01001271
[OBIN] human gut metagenome; human gut
84
157
+
Thr
TGT
[ENA]
¢þ
>WENV180289155
OBIN01001089
[OBIN] human gut metagenome; human gut
101
176
+
Thr
TGT
[ENA]
¢þ
>WENV180289177
OBIN01006373
[OBIN] human gut metagenome; human gut
102
27
-
Gly
GCC
[ENA]
¢þ
>WENV180289167
OBIN01002351
[OBIN] human gut metagenome; human gut
112
37
-
Trp
CCA
[ENA]
¢þ
>WENV180289133
OBIN01000031
[OBIN] human gut metagenome; human gut
112
184
+
Arg
ACG
[ENA]
¢þ
>WENV180289176
OBIN01005762
[OBIN] human gut metagenome; human gut
114
28
-
Leu
CAG
[ENA]
¢þ
>WENV180289145
OBIN01000318
[OBIN] human gut metagenome; human gut
115
199
+
Leu
TAG
[ENA]
¢þ
>WENV180289165
OBIN01002303
[OBIN] human gut metagenome; human gut
116
41
-
Thr
TGT
[ENA]
¢þ
>WENV180289172
OBIN01003777
[OBIN] human gut metagenome; human gut
165
238
+
Ile
TAT
[ENA]
¢þ
>WENV180289168
OBIN01002364
[OBIN] human gut metagenome; human gut
170
97
-
Gly
TCC
[ENA]
¢þ
>WENV180289175
OBIN01005732
[OBIN] human gut metagenome; human gut
172
96
-
Lys
TTT
[ENA]
¢þ
>WENV180289169
OBIN01002944
[OBIN] human gut metagenome; human gut
199
275
+
Pro
TGG
[ENA]
¢þ
>WENV180289156
OBIN01001092
[OBIN] human gut metagenome; human gut
206
281
+
Asn
GTT
[ENA]
¢þ
>WENV180289173
OBIN01003805
[OBIN] human gut metagenome; human gut
208
283
+
Thr
GGT
[ENA]
¢þ
>WENV180289158
OBIN01001271
[OBIN] human gut metagenome; human gut
227
301
+
Lys
TTT
[ENA]
¢þ
>WENV180289170
OBIN01003016
[OBIN] human gut metagenome; human gut
249
332
+
Leu
GAG
[ENA]
¢þ
>WENV180289174
OBIN01004996
[OBIN] human gut metagenome; human gut
263
188
-
His
GTG
[ENA]
¢þ
>WENV180289166
OBIN01002314
[OBIN] human gut metagenome; human gut
275
348
+
fMet
CAT
[ENA]
¢þ
>WENV180289163
OBIN01002003
[OBIN] human gut metagenome; human gut
312
229
-
Ser
GCT
[ENA]
¢þ
>WENV180289146
OBIN01000327
[OBIN] human gut metagenome; human gut
314
388
+
Pro
TGG
[ENA]
¢þ
>WENV180289171
OBIN01003175
[OBIN] human gut metagenome; human gut
339
264
-
Ala
TGC
[ENA]
¢þ
>WENV180289160
OBIN01001480
[OBIN] human gut metagenome; human gut
363
279
-
Tyr
GTA
[ENA]
¢þ
>WENV180289164
OBIN01002303
[OBIN] human gut metagenome; human gut
406
332
-
Trp
CCA
[ENA]
¢þ
>WENV180289162
OBIN01001805
[OBIN] human gut metagenome; human gut
468
397
-
Gln
TTG
[ENA]
¢þ
>WENV180289159
OBIN01001480
[OBIN] human gut metagenome; human gut
490
415
-
Thr
TGT
[ENA]
¢þ
>WENV180289154
OBIN01000801
[OBIN] human gut metagenome; human gut
686
760
+
Phe
GAA
[ENA]
¢þ
>WENV180289147
OBIN01000327
[OBIN] human gut metagenome; human gut
760
831
+
Cys
GCA
[ENA]
¢þ
>WENV180289150
OBIN01000432
[OBIN] human gut metagenome; human gut
774
858
+
Tyr
GTA
[ENA]
¢þ
>WENV180289137
OBIN01000069
[OBIN] human gut metagenome; human gut
849
921
+
Glu
CTC
[ENA]
¢þ
>WENV180289153
OBIN01000723
[OBIN] human gut metagenome; human gut
895
814
-
Leu
TAG
[ENA]
¢þ
>WENV180289151
OBIN01000432
[OBIN] human gut metagenome; human gut
924
996
+
Gly
TCC
[ENA]
¢þ
>WENV180289144
OBIN01000260
[OBIN] human gut metagenome; human gut
1086
1013
-
Ile
TAT
[ENA]
¢þ
>WENV180289138
OBIN01000069
[OBIN] human gut metagenome; human gut
1199
1273
+
Thr
TGT
[ENA]
¢þ
>WENV180289149
OBIN01000340
[OBIN] human gut metagenome; human gut
1226
1302
+
fMet
CAT
[ENA]
¢þ
>WENV180289152
OBIN01000432
[OBIN] human gut metagenome; human gut
1226
1312
+
fMet
CAT
[ENA]
¢þ
>WENV180289148
OBIN01000327
[OBIN] human gut metagenome; human gut
1541
1629
+
Ser
TGA
[ENA]
¢þ
>WENV180289143
OBIN01000160
[OBIN] human gut metagenome; human gut
2210
2136
-
Gln
TTG
[ENA]
¢þ
>WENV180289119
OBIN01000021
[OBIN] human gut metagenome; human gut
2374
2449
+
Ala
TGC
[ENA]
¢þ
>WENV180289116
OBIN01000007
[OBIN] human gut metagenome; human gut
2480
2552
+
Asn
GTT
[ENA]
¢þ
>WENV180289141
OBIN01000128
[OBIN] human gut metagenome; human gut
2603
2676
+
Glu
TTC
[ENA]
¢þ
>WENV180289120
OBIN01000021
[OBIN] human gut metagenome; human gut
3036
3119
+
Leu
CAA
[ENA]
¢þ
>WENV180289142
OBIN01000128
[OBIN] human gut metagenome; human gut
3148
3229
+
Tyr
GTA
[ENA]
¢þ
>WENV180289121
OBIN01000021
[OBIN] human gut metagenome; human gut
3291
3366
+
Lys
TTT
[ENA]
¢þ
>WENV180289122
OBIN01000021
[OBIN] human gut metagenome; human gut
4067
4156
+
Ser
TGA
[ENA]
¢þ
>WENV180289139
OBIN01000069
[OBIN] human gut metagenome; human gut
5105
5189
+
Leu
TAA
[ENA]
¢þ
>WENV180289123
OBIN01000021
[OBIN] human gut metagenome; human gut
5761
5845
+
Leu
TAA
[ENA]
¢þ
>WENV180289140
OBIN01000069
[OBIN] human gut metagenome; human gut
6518
6590
+
Lys
CTT
[ENA]
¢þ
>WENV180289135
OBIN01000032
[OBIN] human gut metagenome; human gut
6839
6765
-
Lys
TTT
[ENA]
¢þ
>WENV180289134
OBIN01000032
[OBIN] human gut metagenome; human gut
6915
6843
-
Gln
TTG
[ENA]
¢þ
>WENV180289132
OBIN01000022
[OBIN] human gut metagenome; human gut
12320
12236
-
Leu
TAG
[ENA]
¢þ
>WENV180289131
OBIN01000022
[OBIN] human gut metagenome; human gut
12398
12324
-
Gln
TTG
[ENA]
¢þ
>WENV180289130
OBIN01000022
[OBIN] human gut metagenome; human gut
12554
12478
-
Ile2
CAT
[ENA]
¢þ
>WENV180289113
OBIN01000003
[OBIN] human gut metagenome; human gut
12639
12712
+
Cys
GCA
[ENA]
¢þ
>WENV180289124
OBIN01000021
[OBIN] human gut metagenome; human gut
12696
12771
+
Trp
CCA
[ENA]
¢þ
>WENV180289125
OBIN01000021
[OBIN] human gut metagenome; human gut
12958
13034
+
Gly
TCC
[ENA]
¢þ
>WENV180289126
OBIN01000021
[OBIN] human gut metagenome; human gut
13153
13227
+
Gln
TTG
[ENA]
¢þ
>WENV180289127
OBIN01000021
[OBIN] human gut metagenome; human gut
13388
13463
+
Thr
CGT
[ENA]
¢þ
>WENV180289128
OBIN01000021
[OBIN] human gut metagenome; human gut
13691
13766
+
Thr
TGT
[ENA]
¢þ
>WENV180289129
OBIN01000021
[OBIN] human gut metagenome; human gut
13895
13970
+
Pro
TGG
[ENA]
¢þ
>WENV180289136
OBIN01000036
[OBIN] human gut metagenome; human gut
14239
14166
-
Gln
TTG
[ENA]
¢þ
>WENV180289117
OBIN01000008
[OBIN] human gut metagenome; human gut
34728
34802
+
Ile
TAT
[ENA]
¢þ
>WENV180289118
OBIN01000008
[OBIN] human gut metagenome; human gut
35538
35613
+
Asn
GTT
[ENA]
¢þ
>WENV180289114
OBIN01000003
[OBIN] human gut metagenome; human gut
50531
50605
+
Met
CAT
[ENA]
¢þ
>WENV180289115
OBIN01000003
[OBIN] human gut metagenome; human gut
50701
50773
+
Arg
CCT
[ENA]
¢þ
>WENV180289112
OBIN01000002
[OBIN] human gut metagenome; human gut
84844
84759
-
Tyr
GTA
[ENA]
¢þ
>WENV180289111
OBIN01000002
[OBIN] human gut metagenome; human gut
84927
84851
-
Glu
TTC
[ENA]
¢þ
>WENV180289110
OBIN01000002
[OBIN] human gut metagenome; human gut
85011
84935
-
Glu
CTC
[ENA]
¢þ
>WENV180289109
OBIN01000002
[OBIN] human gut metagenome; human gut
85170
85095
-
Asn
GTT
[ENA]
¢þ
>WENV180289108
OBIN01000001
[OBIN] human gut metagenome; human gut
102566
102481
-
Ser
TGA
[ENA]
¢þ
>WENV180289107
OBIN01000001
[OBIN] human gut metagenome; human gut
102658
102570
-
Ser
GCT
[ENA]
¢þ
>WENV180289106
OBIN01000001
[OBIN] human gut metagenome; human gut
105729
105646
-
Tyr
GTA
[ENA]
¢þ
>WENV180289105
OBIN01000001
[OBIN] human gut metagenome; human gut
109134
109059
-
Pro
TGG
[ENA]
¢þ
>WENV180289104
OBIN01000001
[OBIN] human gut metagenome; human gut
110095
110022
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK