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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OBIR] human gut metagenome; Skin biopsy
HIT:
136 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180289306
OBIR01004271
[OBIR] human gut metagenome; Skin biopsy
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180289316
OBIR01037659
[OBIR] human gut metagenome; Skin biopsy
2
77
+
Ala
GGC
[ENA]
¢þ
>WENV180289268
OBIR01000462
[OBIR] human gut metagenome; Skin biopsy
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV180289236
OBIR01000048
[OBIR] human gut metagenome; Skin biopsy
6
82
+
fMet
CAT
[ENA]
¢þ
>WENV180289308
OBIR01005880
[OBIR] human gut metagenome; Skin biopsy
54
143
+
Ser
GGA
[ENA]
¢þ
>WENV180289315
OBIR01017582
[OBIR] human gut metagenome; Skin biopsy
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV180289314
OBIR01016250
[OBIR] human gut metagenome; Skin biopsy
79
3
-
Asp
GTC
[ENA]
¢þ
>WENV180289305
OBIR01003959
[OBIR] human gut metagenome; Skin biopsy
97
21
-
Ile2
CAT
[ENA]
¢þ
>WENV180289300
OBIR01003177
[OBIR] human gut metagenome; Skin biopsy
100
27
-
Gly
TCC
[ENA]
¢þ
>WENV180289251
OBIR01000133
[OBIR] human gut metagenome; Skin biopsy
109
184
+
Gly
GCC
[ENA]
¢þ
>WENV180289246
OBIR01000113
[OBIR] human gut metagenome; Skin biopsy
119
195
+
fMet
CAT
[ENA]
¢þ
>WENV180289298
OBIR01003150
[OBIR] human gut metagenome; Skin biopsy
125
201
+
Val
GAC
[ENA]
¢þ
>WENV180289294
OBIR01002260
[OBIR] human gut metagenome; Skin biopsy
133
49
-
Leu
TAG
[ENA]
¢þ
>WENV180289311
OBIR01012304
[OBIR] human gut metagenome; Skin biopsy
151
226
+
Glu
TTC
[ENA]
¢þ
>WENV180289313
OBIR01015945
[OBIR] human gut metagenome; Skin biopsy
161
234
+
Trp
CCA
[ENA]
¢þ
>WENV180289267
OBIR01000439
[OBIR] human gut metagenome; Skin biopsy
184
98
-
Leu
CAG
[ENA]
¢þ
>WENV180289286
OBIR01000695
[OBIR] human gut metagenome; Skin biopsy
190
264
+
Arg
CCT
[ENA]
¢þ
>WENV180289299
OBIR01003177
[OBIR] human gut metagenome; Skin biopsy
209
125
-
Tyr
GTA
[ENA]
¢þ
>WENV180289304
OBIR01003213
[OBIR] human gut metagenome; Skin biopsy
224
149
-
Lys
TTT
[ENA]
¢þ
>WENV180289310
OBIR01007860
[OBIR] human gut metagenome; Skin biopsy
225
150
-
Trp
CCA
[ENA]
¢þ
>WENV180289270
OBIR01000537
[OBIR] human gut metagenome; Skin biopsy
234
150
-
Tyr
GTA
[ENA]
¢þ
>WENV180289289
OBIR01001866
[OBIR] human gut metagenome; Skin biopsy
236
160
-
Asp
GTC
[ENA]
¢þ
>WENV180289293
OBIR01002260
[OBIR] human gut metagenome; Skin biopsy
265
190
-
His
GTG
[ENA]
¢þ
>WENV180289296
OBIR01002850
[OBIR] human gut metagenome; Skin biopsy
273
349
+
Ile
GAT
[ENA]
¢þ
>WENV180289264
OBIR01000396
[OBIR] human gut metagenome; Skin biopsy
285
210
-
Thr
GGT
[ENA]
¢þ
>WENV180289266
OBIR01000439
[OBIR] human gut metagenome; Skin biopsy
305
219
-
Leu
CAG
[ENA]
¢þ
>WENV180289312
OBIR01012607
[OBIR] human gut metagenome; Skin biopsy
305
230
-
Thr
GGT
[ENA]
¢þ
>WENV180289303
OBIR01003213
[OBIR] human gut metagenome; Skin biopsy
306
230
-
Pro
TGG
[ENA]
¢þ
>WENV180289301
OBIR01003200
[OBIR] human gut metagenome; Skin biopsy
363
277
-
Leu
CAG
[ENA]
¢þ
>WENV180289287
OBIR01000938
[OBIR] human gut metagenome; Skin biopsy
365
276
-
Ser
GGA
[ENA]
¢þ
>WENV180289263
OBIR01000396
[OBIR] human gut metagenome; Skin biopsy
366
292
-
Gly
TCC
[ENA]
¢þ
>WENV180289288
OBIR01001866
[OBIR] human gut metagenome; Skin biopsy
367
292
-
Val
TAC
[ENA]
¢þ
>WENV180289292
OBIR01002260
[OBIR] human gut metagenome; Skin biopsy
374
298
-
Arg
TCT
[ENA]
¢þ
>WENV180289309
OBIR01006962
[OBIR] human gut metagenome; Skin biopsy
377
304
-
Ala
CGC
[ENA]
¢þ
>WENV180289302
OBIR01003213
[OBIR] human gut metagenome; Skin biopsy
392
317
-
Asn
GTT
[ENA]
¢þ
>WENV180289307
OBIR01005130
[OBIR] human gut metagenome; Skin biopsy
419
344
-
Glu
TTC
[ENA]
¢þ
>WENV180289272
OBIR01000539
[OBIR] human gut metagenome; Skin biopsy
462
387
-
Thr
TGT
[ENA]
¢þ
>WENV180289297
OBIR01002850
[OBIR] human gut metagenome; Skin biopsy
475
550
+
Ala
TGC
[ENA]
¢þ
>WENV180289225
OBIR01000016
[OBIR] human gut metagenome; Skin biopsy
515
439
-
Met
CAT
[ENA]
¢þ
>WENV180289290
OBIR01001868
[OBIR] human gut metagenome; Skin biopsy
527
611
+
Leu
CAA
[ENA]
¢þ
>WENV180289271
OBIR01000539
[OBIR] human gut metagenome; Skin biopsy
556
469
-
Ser
TGA
[ENA]
¢þ
>WENV180289291
OBIR01002252
[OBIR] human gut metagenome; Skin biopsy
618
542
-
Arg
CCT
[ENA]
¢þ
>WENV180289295
OBIR01002261
[OBIR] human gut metagenome; Skin biopsy
620
696
+
Met
CAT
[ENA]
¢þ
>WENV180289262
OBIR01000396
[OBIR] human gut metagenome; Skin biopsy
650
566
-
Tyr
GTA
[ENA]
¢þ
>WENV180289261
OBIR01000396
[OBIR] human gut metagenome; Skin biopsy
750
675
-
Thr
TGT
[ENA]
¢þ
>WENV180289274
OBIR01000549
[OBIR] human gut metagenome; Skin biopsy
891
816
-
Ala
TGC
[ENA]
¢þ
>WENV180289234
OBIR01000040
[OBIR] human gut metagenome; Skin biopsy
949
874
-
Phe
GAA
[ENA]
¢þ
>WENV180289273
OBIR01000549
[OBIR] human gut metagenome; Skin biopsy
998
922
-
Ile
GAT
[ENA]
¢þ
>WENV180289258
OBIR01000376
[OBIR] human gut metagenome; Skin biopsy
1037
1126
+
Ser
CGA
[ENA]
¢þ
>WENV180289248
OBIR01000120
[OBIR] human gut metagenome; Skin biopsy
1171
1246
+
Asn
GTT
[ENA]
¢þ
>WENV180289278
OBIR01000666
[OBIR] human gut metagenome; Skin biopsy
1291
1367
+
Met
CAT
[ENA]
¢þ
>WENV180289279
OBIR01000666
[OBIR] human gut metagenome; Skin biopsy
1378
1462
+
Leu
TAG
[ENA]
¢þ
>WENV180289276
OBIR01000606
[OBIR] human gut metagenome; Skin biopsy
1437
1513
+
Val
GAC
[ENA]
¢þ
>WENV180289280
OBIR01000666
[OBIR] human gut metagenome; Skin biopsy
1492
1566
+
Gln
TTG
[ENA]
¢þ
>WENV180289277
OBIR01000606
[OBIR] human gut metagenome; Skin biopsy
1535
1611
+
Val
GAC
[ENA]
¢þ
>WENV180289281
OBIR01000666
[OBIR] human gut metagenome; Skin biopsy
1604
1680
+
Met
CAT
[ENA]
¢þ
>WENV180289282
OBIR01000666
[OBIR] human gut metagenome; Skin biopsy
1700
1774
+
Gln
CTG
[ENA]
¢þ
>WENV180289283
OBIR01000672
[OBIR] human gut metagenome; Skin biopsy
2040
2115
+
Val
TAC
[ENA]
¢þ
>WENV180289284
OBIR01000672
[OBIR] human gut metagenome; Skin biopsy
2155
2230
+
Val
TAC
[ENA]
¢þ
>WENV180289285
OBIR01000672
[OBIR] human gut metagenome; Skin biopsy
2238
2313
+
Lys
TTT
[ENA]
¢þ
>WENV180289260
OBIR01000392
[OBIR] human gut metagenome; Skin biopsy
2428
2355
-
Gly
CCC
[ENA]
¢þ
>WENV180289259
OBIR01000380
[OBIR] human gut metagenome; Skin biopsy
2514
2590
+
Arg
TCT
[ENA]
¢þ
>WENV180289275
OBIR01000595
[OBIR] human gut metagenome; Skin biopsy
2755
2830
+
Asn
GTT
[ENA]
¢þ
>WENV180289269
OBIR01000495
[OBIR] human gut metagenome; Skin biopsy
3683
3758
+
Lys
TTT
[ENA]
¢þ
>WENV180289265
OBIR01000402
[OBIR] human gut metagenome; Skin biopsy
3832
3926
+
SeC
TCA
[ENA]
¢þ
>WENV180289257
OBIR01000365
[OBIR] human gut metagenome; Skin biopsy
4177
4253
+
Pro
GGG
[ENA]
¢þ
>WENV180289249
OBIR01000120
[OBIR] human gut metagenome; Skin biopsy
4710
4796
+
Cys
GCA
[ENA]
¢þ
>WENV180289250
OBIR01000120
[OBIR] human gut metagenome; Skin biopsy
5043
5118
+
Trp
CCA
[ENA]
¢þ
>WENV180289256
OBIR01000246
[OBIR] human gut metagenome; Skin biopsy
6410
6497
+
Ser
TGA
[ENA]
¢þ
>WENV180289255
OBIR01000205
[OBIR] human gut metagenome; Skin biopsy
8106
8192
+
Leu
GAG
[ENA]
¢þ
>WENV180289254
OBIR01000169
[OBIR] human gut metagenome; Skin biopsy
8909
8824
-
Leu
TAA
[ENA]
¢þ
>WENV180289253
OBIR01000169
[OBIR] human gut metagenome; Skin biopsy
8993
8920
-
Cys
GCA
[ENA]
¢þ
>WENV180289252
OBIR01000169
[OBIR] human gut metagenome; Skin biopsy
9126
9051
-
Gly
GCC
[ENA]
¢þ
>WENV180289247
OBIR01000119
[OBIR] human gut metagenome; Skin biopsy
12697
12611
-
Leu
CAG
[ENA]
¢þ
>WENV180289241
OBIR01000062
[OBIR] human gut metagenome; Skin biopsy
14435
14359
-
Arg
ACG
[ENA]
¢þ
>WENV180289240
OBIR01000062
[OBIR] human gut metagenome; Skin biopsy
14562
14486
-
Arg
ACG
[ENA]
¢þ
>WENV180289239
OBIR01000062
[OBIR] human gut metagenome; Skin biopsy
14689
14613
-
Arg
ACG
[ENA]
¢þ
>WENV180289245
OBIR01000092
[OBIR] human gut metagenome; Skin biopsy
14774
14858
+
Leu
CAA
[ENA]
¢þ
>WENV180289238
OBIR01000062
[OBIR] human gut metagenome; Skin biopsy
14785
14693
-
Ser
GCT
[ENA]
¢þ
>WENV180289237
OBIR01000060
[OBIR] human gut metagenome; Skin biopsy
14812
14888
+
Asp
GTC
[ENA]
¢þ
>WENV180289244
OBIR01000075
[OBIR] human gut metagenome; Skin biopsy
16423
16346
-
Leu
TAA
[ENA]
¢þ
>WENV180289243
OBIR01000073
[OBIR] human gut metagenome; Skin biopsy
16866
16791
-
Trp
CCA
[ENA]
¢þ
>WENV180289242
OBIR01000071
[OBIR] human gut metagenome; Skin biopsy
17182
17107
-
Ala
GGC
[ENA]
¢þ
>WENV180289228
OBIR01000019
[OBIR] human gut metagenome; Skin biopsy
18231
18305
+
Pro
GGG
[ENA]
¢þ
>WENV180289235
OBIR01000044
[OBIR] human gut metagenome; Skin biopsy
21948
21872
-
Pro
TGG
[ENA]
¢þ
>WENV180289215
OBIR01000012
[OBIR] human gut metagenome; Skin biopsy
24120
24203
+
Tyr
GTA
[ENA]
¢þ
>WENV180289233
OBIR01000040
[OBIR] human gut metagenome; Skin biopsy
24308
24383
+
Gly
GCC
[ENA]
¢þ
>WENV180289216
OBIR01000012
[OBIR] human gut metagenome; Skin biopsy
24368
24441
+
Thr
GGT
[ENA]
¢þ
>WENV180289217
OBIR01000012
[OBIR] human gut metagenome; Skin biopsy
24502
24578
+
Met
CAT
[ENA]
¢þ
>WENV180289230
OBIR01000028
[OBIR] human gut metagenome; Skin biopsy
34598
34674
+
Arg
CCG
[ENA]
¢þ
>WENV180289231
OBIR01000028
[OBIR] human gut metagenome; Skin biopsy
34734
34809
+
His
GTG
[ENA]
¢þ
>WENV180289232
OBIR01000028
[OBIR] human gut metagenome; Skin biopsy
34853
34939
+
Leu
CAG
[ENA]
¢þ
>WENV180289219
OBIR01000013
[OBIR] human gut metagenome; Skin biopsy
37388
37477
+
Ser
CGA
[ENA]
¢þ
>WENV180289214
OBIR01000011
[OBIR] human gut metagenome; Skin biopsy
37591
37515
-
Pro
CGG
[ENA]
¢þ
>WENV180289227
OBIR01000018
[OBIR] human gut metagenome; Skin biopsy
40906
40833
-
Glu
CTC
[ENA]
¢þ
>WENV180289226
OBIR01000018
[OBIR] human gut metagenome; Skin biopsy
41078
41006
-
Gln
CTG
[ENA]
¢þ
>WENV180289229
OBIR01000020
[OBIR] human gut metagenome; Skin biopsy
42761
42848
+
Ser
GCT
[ENA]
¢þ
>WENV180289218
OBIR01000012
[OBIR] human gut metagenome; Skin biopsy
46361
46434
+
Trp
CCA
[ENA]
¢þ
>WENV180289205
OBIR01000006
[OBIR] human gut metagenome; Skin biopsy
49779
49695
-
Leu
CAG
[ENA]
¢þ
>WENV180289204
OBIR01000006
[OBIR] human gut metagenome; Skin biopsy
66098
66023
-
Ala
TGC
[ENA]
¢þ
>WENV180289203
OBIR01000006
[OBIR] human gut metagenome; Skin biopsy
66357
66283
-
Ile
GAT
[ENA]
¢þ
>WENV180289224
OBIR01000015
[OBIR] human gut metagenome; Skin biopsy
86664
86591
-
Val
CAC
[ENA]
¢þ
>WENV180289213
OBIR01000009
[OBIR] human gut metagenome; Skin biopsy
86726
86651
-
Val
TAC
[ENA]
¢þ
>WENV180289221
OBIR01000015
[OBIR] human gut metagenome; Skin biopsy
88919
88992
+
Gly
GCC
[ENA]
¢þ
>WENV180289222
OBIR01000015
[OBIR] human gut metagenome; Skin biopsy
89047
89118
+
Cys
GCA
[ENA]
¢þ
>WENV180289223
OBIR01000015
[OBIR] human gut metagenome; Skin biopsy
89132
89204
+
Val
GAC
[ENA]
¢þ
>WENV180289220
OBIR01000013
[OBIR] human gut metagenome; Skin biopsy
93415
93329
-
Ser
GGA
[ENA]
¢þ
>WENV180289206
OBIR01000007
[OBIR] human gut metagenome; Skin biopsy
97248
97321
+
Arg
ACG
[ENA]
¢þ
>WENV180289207
OBIR01000007
[OBIR] human gut metagenome; Skin biopsy
97364
97438
+
Arg
CCG
[ENA]
¢þ
>WENV180289212
OBIR01000009
[OBIR] human gut metagenome; Skin biopsy
100711
100636
-
Ile2
CAT
[ENA]
¢þ
>WENV180289210
OBIR01000009
[OBIR] human gut metagenome; Skin biopsy
101341
101415
+
Asn
GTT
[ENA]
¢þ
>WENV180289189
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
127665
127739
+
Arg
CCG
[ENA]
¢þ
>WENV180289202
OBIR01000004
[OBIR] human gut metagenome; Skin biopsy
155993
156067
+
fMet
CAT
[ENA]
¢þ
>WENV180289209
OBIR01000007
[OBIR] human gut metagenome; Skin biopsy
177357
177270
-
Leu
GAG
[ENA]
¢þ
>WENV180289211
OBIR01000009
[OBIR] human gut metagenome; Skin biopsy
205886
205812
-
Ala
GGC
[ENA]
¢þ
>WENV180289208
OBIR01000007
[OBIR] human gut metagenome; Skin biopsy
232067
231992
-
Leu
CAA
[ENA]
¢þ
>WENV180289188
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
240800
240725
-
Thr
CGT
[ENA]
¢þ
>WENV180289201
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
320906
320831
-
Pro
TGG
[ENA]
¢þ
>WENV180289195
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
321095
321167
+
Gly
TCC
[ENA]
¢þ
>WENV180289181
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
324034
324107
+
Lys
TTT
[ENA]
¢þ
>WENV180289194
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
340342
340266
-
Leu
TAA
[ENA]
¢þ
>WENV180289182
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
352612
352685
+
Glu
TTC
[ENA]
¢þ
>WENV180289183
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
352848
352922
+
Asp
GTC
[ENA]
¢þ
>WENV180289196
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
355113
355188
+
Arg
TCT
[ENA]
¢þ
>WENV180289197
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
385394
385469
+
His
GTG
[ENA]
¢þ
>WENV180289193
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
385608
385536
-
Gln
TTG
[ENA]
¢þ
>WENV180289200
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
402774
402700
-
Lys
CTT
[ENA]
¢þ
>WENV180289199
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
402975
402900
-
Lys
CTT
[ENA]
¢þ
>WENV180289198
OBIR01000003
[OBIR] human gut metagenome; Skin biopsy
404106
404189
+
Leu
TAG
[ENA]
¢þ
>WENV180289192
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
451448
451375
-
Ala
CGC
[ENA]
¢þ
>WENV180289191
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
471725
471651
-
Arg
CCT
[ENA]
¢þ
>WENV180289184
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
520822
520893
+
Gly
CCC
[ENA]
¢þ
>WENV180289187
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
545687
545614
-
Arg
ACG
[ENA]
¢þ
>WENV180289186
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
548322
548233
-
Ser
GCT
[ENA]
¢þ
>WENV180289185
OBIR01000001
[OBIR] human gut metagenome; Skin biopsy
551694
551607
-
Ser
TGA
[ENA]
¢þ
>WENV180289190
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
554774
554699
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK