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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBJW] human gut metagenome; human gut
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180312088
OBJW01000351
[OBJW] human gut metagenome; human gut
18
93
+
Ala
TGC
[ENA]
¢þ
>WENV180312130
OBJW01010099
[OBJW] human gut metagenome; human gut
19
108
+
Ser
GCT
[ENA]
¢þ
>WENV180312128
OBJW01007778
[OBJW] human gut metagenome; human gut
28
101
+
Ile
TAT
[ENA]
¢þ
>WENV180312123
OBJW01006703
[OBJW] human gut metagenome; human gut
46
121
+
Gly
GCC
[ENA]
¢þ
>WENV180312126
OBJW01007375
[OBJW] human gut metagenome; human gut
56
131
+
Thr
CGT
[ENA]
¢þ
>WENV180312124
OBJW01007111
[OBJW] human gut metagenome; human gut
62
137
+
Val
TAC
[ENA]
¢þ
>WENV180312117
OBJW01003092
[OBJW] human gut metagenome; human gut
64
140
+
Pro
TGG
[ENA]
¢þ
>WENV180312129
OBJW01009815
[OBJW] human gut metagenome; human gut
67
142
+
Ala
TGC
[ENA]
¢þ
>WENV180312106
OBJW01001727
[OBJW] human gut metagenome; human gut
78
6
-
Arg
TCT
[ENA]
¢þ
>WENV180312108
OBJW01001868
[OBJW] human gut metagenome; human gut
82
156
+
Ile
TAT
[ENA]
¢þ
>WENV180312135
OBJW01013536
[OBJW] human gut metagenome; human gut
86
12
-
Asn
GTT
[ENA]
¢þ
>WENV180312119
OBJW01004797
[OBJW] human gut metagenome; human gut
87
14
-
Asp
GTC
[ENA]
¢þ
>WENV180312113
OBJW01002410
[OBJW] human gut metagenome; human gut
92
169
+
Met
CAT
[ENA]
¢þ
>WENV180312097
OBJW01000695
[OBJW] human gut metagenome; human gut
96
24
-
Gly
TCC
[ENA]
¢þ
>WENV180312134
OBJW01011706
[OBJW] human gut metagenome; human gut
106
31
-
Lys
TTT
[ENA]
¢þ
>WENV180312131
OBJW01010215
[OBJW] human gut metagenome; human gut
108
32
-
Met
CAT
[ENA]
¢þ
>WENV180312132
OBJW01010964
[OBJW] human gut metagenome; human gut
120
195
+
Val
GAC
[ENA]
¢þ
>WENV180312112
OBJW01002363
[OBJW] human gut metagenome; human gut
137
213
+
fMet
CAT
[ENA]
¢þ
>WENV180312125
OBJW01007111
[OBJW] human gut metagenome; human gut
143
219
+
Asp
GTC
[ENA]
¢þ
>WENV180312133
OBJW01011706
[OBJW] human gut metagenome; human gut
186
110
-
His
GTG
[ENA]
¢þ
>WENV180312116
OBJW01002779
[OBJW] human gut metagenome; human gut
188
104
-
Tyr
GTA
[ENA]
¢þ
>WENV180312110
OBJW01002168
[OBJW] human gut metagenome; human gut
189
277
+
Ser
TGA
[ENA]
¢þ
>WENV180312100
OBJW01000739
[OBJW] human gut metagenome; human gut
202
128
-
Met
CAT
[ENA]
¢þ
>WENV180312120
OBJW01005309
[OBJW] human gut metagenome; human gut
221
137
-
Leu
TAA
[ENA]
¢þ
>WENV180312127
OBJW01007761
[OBJW] human gut metagenome; human gut
228
142
-
fMet
CAT
[ENA]
¢þ
>WENV180312121
OBJW01005516
[OBJW] human gut metagenome; human gut
230
303
+
Gly
TCC
[ENA]
¢þ
>WENV180312122
OBJW01005657
[OBJW] human gut metagenome; human gut
241
315
+
Lys
CTT
[ENA]
¢þ
>WENV180312091
OBJW01000501
[OBJW] human gut metagenome; human gut
243
317
+
Pro
TGG
[ENA]
¢þ
>WENV180312096
OBJW01000695
[OBJW] human gut metagenome; human gut
246
162
-
Tyr
GTA
[ENA]
¢þ
>WENV180312118
OBJW01003211
[OBJW] human gut metagenome; human gut
310
236
-
Gln
TTG
[ENA]
¢þ
>WENV180312115
OBJW01002779
[OBJW] human gut metagenome; human gut
315
240
-
Thr
TGT
[ENA]
¢þ
>WENV180312111
OBJW01002168
[OBJW] human gut metagenome; human gut
346
436
+
Ser
GCT
[ENA]
¢þ
>WENV180312114
OBJW01002596
[OBJW] human gut metagenome; human gut
402
327
-
Gly
TCC
[ENA]
¢þ
>WENV180312095
OBJW01000649
[OBJW] human gut metagenome; human gut
421
346
-
Asn
GTT
[ENA]
¢þ
>WENV180312099
OBJW01000739
[OBJW] human gut metagenome; human gut
440
358
-
Leu
CAA
[ENA]
¢þ
>WENV180312105
OBJW01001629
[OBJW] human gut metagenome; human gut
500
584
+
Leu
TAG
[ENA]
¢þ
>WENV180312104
OBJW01001215
[OBJW] human gut metagenome; human gut
544
620
+
Pro
GGG
[ENA]
¢þ
>WENV180312109
OBJW01001927
[OBJW] human gut metagenome; human gut
568
492
-
Arg
ACG
[ENA]
¢þ
>WENV180312107
OBJW01001728
[OBJW] human gut metagenome; human gut
572
644
+
Arg
TCT
[ENA]
¢þ
>WENV180312102
OBJW01000950
[OBJW] human gut metagenome; human gut
623
547
-
Pro
CGG
[ENA]
¢þ
>WENV180312092
OBJW01000501
[OBJW] human gut metagenome; human gut
689
760
+
Cys
GCA
[ENA]
¢þ
>WENV180312103
OBJW01000959
[OBJW] human gut metagenome; human gut
709
625
-
Leu
GAG
[ENA]
¢þ
>WENV180312101
OBJW01000950
[OBJW] human gut metagenome; human gut
729
656
-
Gln
CTG
[ENA]
¢þ
>WENV180312098
OBJW01000699
[OBJW] human gut metagenome; human gut
1048
1124
+
Ile2
CAT
[ENA]
¢þ
>WENV180312087
OBJW01000272
[OBJW] human gut metagenome; human gut
1217
1292
+
Thr
TGT
[ENA]
¢þ
>WENV180312094
OBJW01000649
[OBJW] human gut metagenome; human gut
1231
1157
-
Ile
TAT
[ENA]
¢þ
>WENV180312089
OBJW01000436
[OBJW] human gut metagenome; human gut
1273
1345
+
Glu
CTC
[ENA]
¢þ
>WENV180312093
OBJW01000501
[OBJW] human gut metagenome; human gut
1470
1558
+
Ser
TGA
[ENA]
¢þ
>WENV180312090
OBJW01000436
[OBJW] human gut metagenome; human gut
1623
1697
+
Thr
TGT
[ENA]
¢þ
>WENV180312082
OBJW01000082
[OBJW] human gut metagenome; human gut
1828
1754
-
Lys
TTT
[ENA]
¢þ
>WENV180312081
OBJW01000082
[OBJW] human gut metagenome; human gut
1904
1832
-
Gln
TTG
[ENA]
¢þ
>WENV180312086
OBJW01000198
[OBJW] human gut metagenome; human gut
2870
2797
-
Trp
CCA
[ENA]
¢þ
>WENV180312077
OBJW01000044
[OBJW] human gut metagenome; human gut
3227
3299
+
Gln
TTG
[ENA]
¢þ
>WENV180312084
OBJW01000136
[OBJW] human gut metagenome; human gut
4424
4350
-
Gln
TTG
[ENA]
¢þ
>WENV180312085
OBJW01000151
[OBJW] human gut metagenome; human gut
4950
5024
+
Ile
TAT
[ENA]
¢þ
>WENV180312039
OBJW01000004
[OBJW] human gut metagenome; human gut
5821
5896
+
Ala
TGC
[ENA]
¢þ
>WENV180312040
OBJW01000004
[OBJW] human gut metagenome; human gut
6483
6566
+
Leu
CAA
[ENA]
¢þ
>WENV180312041
OBJW01000004
[OBJW] human gut metagenome; human gut
6738
6813
+
Lys
TTT
[ENA]
¢þ
>WENV180312083
OBJW01000092
[OBJW] human gut metagenome; human gut
7494
7422
-
Lys
CTT
[ENA]
¢þ
>WENV180312042
OBJW01000004
[OBJW] human gut metagenome; human gut
7514
7603
+
Ser
TGA
[ENA]
¢þ
>WENV180312068
OBJW01000037
[OBJW] human gut metagenome; human gut
8162
8235
+
Phe
GAA
[ENA]
¢þ
>WENV180312069
OBJW01000037
[OBJW] human gut metagenome; human gut
8336
8410
+
Ile2
CAT
[ENA]
¢þ
>WENV180312028
OBJW01000002
[OBJW] human gut metagenome; human gut
8662
8735
+
Glu
TTC
[ENA]
¢þ
>WENV180312029
OBJW01000002
[OBJW] human gut metagenome; human gut
9207
9288
+
Tyr
GTA
[ENA]
¢þ
>WENV180312043
OBJW01000004
[OBJW] human gut metagenome; human gut
9208
9292
+
Leu
TAA
[ENA]
¢þ
>WENV180312070
OBJW01000037
[OBJW] human gut metagenome; human gut
9312
9385
+
Glu
TTC
[ENA]
¢þ
>WENV180312071
OBJW01000037
[OBJW] human gut metagenome; human gut
10136
10212
+
Arg
ACG
[ENA]
¢þ
>WENV180312072
OBJW01000037
[OBJW] human gut metagenome; human gut
10215
10286
+
Asn
GTT
[ENA]
¢þ
>WENV180312073
OBJW01000037
[OBJW] human gut metagenome; human gut
10487
10570
+
Ser
GCT
[ENA]
¢þ
>WENV180312080
OBJW01000072
[OBJW] human gut metagenome; human gut
10687
10602
-
Leu
TAA
[ENA]
¢þ
>WENV180312079
OBJW01000072
[OBJW] human gut metagenome; human gut
10919
10834
-
Tyr
GTA
[ENA]
¢þ
>WENV180312074
OBJW01000037
[OBJW] human gut metagenome; human gut
11493
11566
+
fMet
CAT
[ENA]
¢þ
>WENV180312057
OBJW01000009
[OBJW] human gut metagenome; human gut
12639
12712
+
Cys
GCA
[ENA]
¢þ
>WENV180312064
OBJW01000022
[OBJW] human gut metagenome; human gut
13021
12949
-
Arg
CCG
[ENA]
¢þ
>WENV180312065
OBJW01000034
[OBJW] human gut metagenome; human gut
13165
13241
+
Ile2
CAT
[ENA]
¢þ
>WENV180312056
OBJW01000006
[OBJW] human gut metagenome; human gut
13233
13159
-
Arg
TCT
[ENA]
¢þ
>WENV180312066
OBJW01000034
[OBJW] human gut metagenome; human gut
13245
13319
+
Trp
CCA
[ENA]
¢þ
>WENV180312034
OBJW01000003
[OBJW] human gut metagenome; human gut
13263
13336
+
Asn
GTT
[ENA]
¢þ
>WENV180312067
OBJW01000034
[OBJW] human gut metagenome; human gut
13535
13610
+
Thr
TGT
[ENA]
¢þ
>WENV180312035
OBJW01000003
[OBJW] human gut metagenome; human gut
14224
14299
+
Pro
TGG
[ENA]
¢þ
>WENV180312078
OBJW01000056
[OBJW] human gut metagenome; human gut
14274
14201
-
Gln
TTG
[ENA]
¢þ
>WENV180312044
OBJW01000004
[OBJW] human gut metagenome; human gut
16143
16218
+
Trp
CCA
[ENA]
¢þ
>WENV180312045
OBJW01000004
[OBJW] human gut metagenome; human gut
16405
16481
+
Gly
TCC
[ENA]
¢þ
>WENV180312046
OBJW01000004
[OBJW] human gut metagenome; human gut
16600
16674
+
Gln
TTG
[ENA]
¢þ
>WENV180312047
OBJW01000004
[OBJW] human gut metagenome; human gut
16835
16910
+
Thr
CGT
[ENA]
¢þ
>WENV180312048
OBJW01000004
[OBJW] human gut metagenome; human gut
17138
17213
+
Thr
TGT
[ENA]
¢þ
>WENV180312049
OBJW01000004
[OBJW] human gut metagenome; human gut
17342
17417
+
Pro
TGG
[ENA]
¢þ
>WENV180312036
OBJW01000003
[OBJW] human gut metagenome; human gut
17629
17712
+
Tyr
GTA
[ENA]
¢þ
>WENV180312075
OBJW01000037
[OBJW] human gut metagenome; human gut
19409
19482
+
Thr
TGT
[ENA]
¢þ
>WENV180312076
OBJW01000037
[OBJW] human gut metagenome; human gut
19552
19626
+
Lys
TTT
[ENA]
¢þ
>WENV180312037
OBJW01000003
[OBJW] human gut metagenome; human gut
20700
20788
+
Ser
GCT
[ENA]
¢þ
>WENV180312038
OBJW01000003
[OBJW] human gut metagenome; human gut
20792
20877
+
Ser
TGA
[ENA]
¢þ
>WENV180312060
OBJW01000012
[OBJW] human gut metagenome; human gut
35177
35253
+
Ile2
CAT
[ENA]
¢þ
>WENV180312061
OBJW01000012
[OBJW] human gut metagenome; human gut
35333
35407
+
Gln
TTG
[ENA]
¢þ
>WENV180312062
OBJW01000012
[OBJW] human gut metagenome; human gut
35411
35495
+
Leu
TAG
[ENA]
¢þ
>WENV180312063
OBJW01000019
[OBJW] human gut metagenome; human gut
42594
42668
+
Glu
TTC
[ENA]
¢þ
>WENV180312058
OBJW01000009
[OBJW] human gut metagenome; human gut
50531
50605
+
Met
CAT
[ENA]
¢þ
>WENV180312059
OBJW01000009
[OBJW] human gut metagenome; human gut
50701
50773
+
Arg
CCT
[ENA]
¢þ
>WENV180312055
OBJW01000006
[OBJW] human gut metagenome; human gut
77130
77053
-
Ile2
CAT
[ENA]
¢þ
>WENV180312054
OBJW01000006
[OBJW] human gut metagenome; human gut
77729
77658
-
Gln
TTG
[ENA]
¢þ
>WENV180312025
OBJW01000001
[OBJW] human gut metagenome; human gut
93916
94001
+
Leu
TAA
[ENA]
¢þ
>WENV180312026
OBJW01000001
[OBJW] human gut metagenome; human gut
94341
94414
+
Ile
TAT
[ENA]
¢þ
>WENV180312027
OBJW01000001
[OBJW] human gut metagenome; human gut
95804
95879
+
Lys
TTT
[ENA]
¢þ
>WENV180312053
OBJW01000004
[OBJW] human gut metagenome; human gut
113988
113903
-
Tyr
GTA
[ENA]
¢þ
>WENV180312052
OBJW01000004
[OBJW] human gut metagenome; human gut
114071
113995
-
Glu
TTC
[ENA]
¢þ
>WENV180312051
OBJW01000004
[OBJW] human gut metagenome; human gut
114155
114079
-
Glu
CTC
[ENA]
¢þ
>WENV180312050
OBJW01000004
[OBJW] human gut metagenome; human gut
114314
114239
-
Asn
GTT
[ENA]
¢þ
>WENV180312033
OBJW01000002
[OBJW] human gut metagenome; human gut
114531
114450
-
Leu
TAG
[ENA]
¢þ
>WENV180312032
OBJW01000002
[OBJW] human gut metagenome; human gut
115929
115855
-
Phe
GAA
[ENA]
¢þ
>WENV180312031
OBJW01000002
[OBJW] human gut metagenome; human gut
117483
117410
-
Ile2
CAT
[ENA]
¢þ
>WENV180312030
OBJW01000002
[OBJW] human gut metagenome; human gut
117979
117908
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK