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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBKB] human gut metagenome; human gut
HIT:
130 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180313076
OBKB01000203
[OBKB] human gut metagenome; human gut
19
108
+
Ser
GCT
[ENA]
¢þ
>WENV180313125
OBKB01007436
[OBKB] human gut metagenome; human gut
21
108
+
Ser
TGA
[ENA]
¢þ
>WENV180313090
OBKB01000338
[OBKB] human gut metagenome; human gut
22
97
+
Thr
TGT
[ENA]
¢þ
>WENV180313098
OBKB01000653
[OBKB] human gut metagenome; human gut
28
102
+
Thr
TGT
[ENA]
¢þ
>WENV180313127
OBKB01007540
[OBKB] human gut metagenome; human gut
30
103
+
Arg
ACG
[ENA]
¢þ
>WENV180313110
OBKB01004249
[OBKB] human gut metagenome; human gut
43
117
+
Glu
CTC
[ENA]
¢þ
>WENV180313101
OBKB01000817
[OBKB] human gut metagenome; human gut
49
123
+
Phe
GAA
[ENA]
¢þ
>WENV180313132
OBKB01009270
[OBKB] human gut metagenome; human gut
70
144
+
Ile
TAT
[ENA]
¢þ
>WENV180313131
OBKB01008752
[OBKB] human gut metagenome; human gut
73
-1
-
Glu
CTC
[ENA]
¢þ
>WENV180313116
OBKB01004674
[OBKB] human gut metagenome; human gut
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV180313133
OBKB01010963
[OBKB] human gut metagenome; human gut
76
151
+
Pro
CGG
[ENA]
¢þ
>WENV180313134
OBKB01011180
[OBKB] human gut metagenome; human gut
81
5
-
Lys
TTT
[ENA]
¢þ
>WENV180313135
OBKB01014128
[OBKB] human gut metagenome; human gut
91
16
-
Asn
GTT
[ENA]
¢þ
>WENV180313130
OBKB01008430
[OBKB] human gut metagenome; human gut
94
180
+
Leu
CAG
[ENA]
¢þ
>WENV180313094
OBKB01000383
[OBKB] human gut metagenome; human gut
97
9
-
Ser
TGA
[ENA]
¢þ
>WENV180313119
OBKB01004987
[OBKB] human gut metagenome; human gut
106
180
+
Gln
TTG
[ENA]
¢þ
>WENV180313128
OBKB01007540
[OBKB] human gut metagenome; human gut
107
179
+
Gln
TTG
[ENA]
¢þ
>WENV180313087
OBKB01000237
[OBKB] human gut metagenome; human gut
112
184
+
Arg
ACG
[ENA]
¢þ
>WENV180313111
OBKB01004249
[OBKB] human gut metagenome; human gut
121
196
+
Lys
CTT
[ENA]
¢þ
>WENV180313124
OBKB01005818
[OBKB] human gut metagenome; human gut
129
206
+
Ile2
CAT
[ENA]
¢þ
>WENV180313118
OBKB01004843
[OBKB] human gut metagenome; human gut
132
41
-
Ser
CGA
[ENA]
¢þ
>WENV180313100
OBKB01000761
[OBKB] human gut metagenome; human gut
136
64
-
Asn
GTT
[ENA]
¢þ
>WENV180313126
OBKB01007436
[OBKB] human gut metagenome; human gut
142
235
+
Ser
GCT
[ENA]
¢þ
>WENV180313115
OBKB01004674
[OBKB] human gut metagenome; human gut
159
84
-
Phe
GAA
[ENA]
¢þ
>WENV180313121
OBKB01004988
[OBKB] human gut metagenome; human gut
160
89
-
Asn
GTT
[ENA]
¢þ
>WENV180313123
OBKB01005688
[OBKB] human gut metagenome; human gut
164
240
+
Gly
TCC
[ENA]
¢þ
>WENV180313109
OBKB01004241
[OBKB] human gut metagenome; human gut
168
92
-
Pro
TGG
[ENA]
¢þ
>WENV180313108
OBKB01003712
[OBKB] human gut metagenome; human gut
170
96
-
Glu
CTC
[ENA]
¢þ
>WENV180313106
OBKB01003509
[OBKB] human gut metagenome; human gut
174
101
-
Thr
TGT
[ENA]
¢þ
>WENV180313073
OBKB01000115
[OBKB] human gut metagenome; human gut
177
101
-
Arg
CCG
[ENA]
¢þ
>WENV180313129
OBKB01007540
[OBKB] human gut metagenome; human gut
179
252
+
Trp
CCA
[ENA]
¢þ
>WENV180313066
OBKB01000079
[OBKB] human gut metagenome; human gut
186
113
-
Gly
TCC
[ENA]
¢þ
>WENV180313117
OBKB01004698
[OBKB] human gut metagenome; human gut
218
143
-
Lys
CTT
[ENA]
¢þ
>WENV180313120
OBKB01004988
[OBKB] human gut metagenome; human gut
239
163
-
Arg
ACG
[ENA]
¢þ
>WENV180313114
OBKB01004674
[OBKB] human gut metagenome; human gut
242
166
-
Asp
GTC
[ENA]
¢þ
>WENV180313112
OBKB01004428
[OBKB] human gut metagenome; human gut
247
320
+
Trp
CCA
[ENA]
¢þ
>WENV180313105
OBKB01001862
[OBKB] human gut metagenome; human gut
251
324
+
Glu
TTC
[ENA]
¢þ
>WENV180313102
OBKB01001056
[OBKB] human gut metagenome; human gut
267
192
-
Asn
GTT
[ENA]
¢þ
>WENV180313068
OBKB01000084
[OBKB] human gut metagenome; human gut
279
205
-
Trp
CCA
[ENA]
¢þ
>WENV180313091
OBKB01000372
[OBKB] human gut metagenome; human gut
293
377
+
Leu
TAA
[ENA]
¢þ
>WENV180313122
OBKB01005173
[OBKB] human gut metagenome; human gut
302
218
-
Leu
GAG
[ENA]
¢þ
>WENV180313072
OBKB01000106
[OBKB] human gut metagenome; human gut
302
375
+
Gln
TTG
[ENA]
¢þ
>WENV180313107
OBKB01003712
[OBKB] human gut metagenome; human gut
304
229
-
Lys
CTT
[ENA]
¢þ
>WENV180313113
OBKB01004674
[OBKB] human gut metagenome; human gut
323
248
-
Val
TAC
[ENA]
¢þ
>WENV180313103
OBKB01001123
[OBKB] human gut metagenome; human gut
331
257
-
Ile
TAT
[ENA]
¢þ
>WENV180313084
OBKB01000234
[OBKB] human gut metagenome; human gut
334
408
+
Thr
TGT
[ENA]
¢þ
>WENV180313067
OBKB01000084
[OBKB] human gut metagenome; human gut
359
283
-
Ile2
CAT
[ENA]
¢þ
>WENV180313099
OBKB01000761
[OBKB] human gut metagenome; human gut
421
349
-
Glu
TTC
[ENA]
¢þ
>WENV180313071
OBKB01000095
[OBKB] human gut metagenome; human gut
428
500
+
Gln
TTG
[ENA]
¢þ
>WENV180313093
OBKB01000383
[OBKB] human gut metagenome; human gut
496
572
+
Arg
CCT
[ENA]
¢þ
>WENV180313096
OBKB01000485
[OBKB] human gut metagenome; human gut
587
662
+
Ala
TGC
[ENA]
¢þ
>WENV180313104
OBKB01001458
[OBKB] human gut metagenome; human gut
682
607
-
Ile2
CAT
[ENA]
¢þ
>WENV180313088
OBKB01000254
[OBKB] human gut metagenome; human gut
696
768
+
Gln
TTG
[ENA]
¢þ
>WENV180313097
OBKB01000485
[OBKB] human gut metagenome; human gut
718
794
+
Ile
GAT
[ENA]
¢þ
>WENV180313089
OBKB01000254
[OBKB] human gut metagenome; human gut
772
846
+
Lys
TTT
[ENA]
¢þ
>WENV180313069
OBKB01000091
[OBKB] human gut metagenome; human gut
860
935
+
Ala
GGC
[ENA]
¢þ
>WENV180313077
OBKB01000210
[OBKB] human gut metagenome; human gut
1260
1344
+
Tyr
GTA
[ENA]
¢þ
>WENV180313078
OBKB01000210
[OBKB] human gut metagenome; human gut
1410
1482
+
Gly
TCC
[ENA]
¢þ
>WENV180313092
OBKB01000372
[OBKB] human gut metagenome; human gut
1706
1778
+
Lys
CTT
[ENA]
¢þ
>WENV180313079
OBKB01000210
[OBKB] human gut metagenome; human gut
1712
1798
+
fMet
CAT
[ENA]
¢þ
>WENV180313035
OBKB01000011
[OBKB] human gut metagenome; human gut
1890
1813
-
Met
CAT
[ENA]
¢þ
>WENV180313080
OBKB01000210
[OBKB] human gut metagenome; human gut
2253
2327
+
Pro
TGG
[ENA]
¢þ
>WENV180313095
OBKB01000386
[OBKB] human gut metagenome; human gut
2583
2510
-
Ile2
CAT
[ENA]
¢þ
>WENV180313081
OBKB01000210
[OBKB] human gut metagenome; human gut
2699
2770
+
Cys
GCA
[ENA]
¢þ
>WENV180313060
OBKB01000054
[OBKB] human gut metagenome; human gut
3246
3159
-
Ser
CGA
[ENA]
¢þ
>WENV180313082
OBKB01000210
[OBKB] human gut metagenome; human gut
3480
3568
+
Ser
TGA
[ENA]
¢þ
>WENV180313086
OBKB01000236
[OBKB] human gut metagenome; human gut
3636
3563
-
fMet
CAT
[ENA]
¢þ
>WENV180313083
OBKB01000210
[OBKB] human gut metagenome; human gut
4197
4269
+
Arg
TCT
[ENA]
¢þ
>WENV180313075
OBKB01000118
[OBKB] human gut metagenome; human gut
4407
4483
+
fMet
CAT
[ENA]
¢þ
>WENV180313085
OBKB01000236
[OBKB] human gut metagenome; human gut
4642
4559
-
Ser
GCT
[ENA]
¢þ
>WENV180313040
OBKB01000015
[OBKB] human gut metagenome; human gut
4835
4759
-
Ile2
CAT
[ENA]
¢þ
>WENV180313059
OBKB01000051
[OBKB] human gut metagenome; human gut
4940
4853
-
Leu
TAA
[ENA]
¢þ
>WENV180313058
OBKB01000051
[OBKB] human gut metagenome; human gut
5024
4950
-
Glu
TTC
[ENA]
¢þ
>WENV180313057
OBKB01000051
[OBKB] human gut metagenome; human gut
5106
5030
-
Met
CAT
[ENA]
¢þ
>WENV180313022
OBKB01000008
[OBKB] human gut metagenome; human gut
5286
5361
+
Ala
TGC
[ENA]
¢þ
>WENV180313023
OBKB01000008
[OBKB] human gut metagenome; human gut
5948
6031
+
Leu
CAA
[ENA]
¢þ
>WENV180313024
OBKB01000008
[OBKB] human gut metagenome; human gut
6203
6278
+
Lys
TTT
[ENA]
¢þ
>WENV180313025
OBKB01000008
[OBKB] human gut metagenome; human gut
6979
7068
+
Ser
TGA
[ENA]
¢þ
>WENV180313047
OBKB01000022
[OBKB] human gut metagenome; human gut
8156
8231
+
Asn
GTT
[ENA]
¢þ
>WENV180313048
OBKB01000022
[OBKB] human gut metagenome; human gut
8315
8391
+
Glu
CTC
[ENA]
¢þ
>WENV180313049
OBKB01000022
[OBKB] human gut metagenome; human gut
8399
8475
+
Glu
TTC
[ENA]
¢þ
>WENV180313050
OBKB01000022
[OBKB] human gut metagenome; human gut
8482
8567
+
Tyr
GTA
[ENA]
¢þ
>WENV180313070
OBKB01000092
[OBKB] human gut metagenome; human gut
8485
8577
+
Ser
GGA
[ENA]
¢þ
>WENV180313061
OBKB01000062
[OBKB] human gut metagenome; human gut
8662
8735
+
Glu
TTC
[ENA]
¢þ
>WENV180313026
OBKB01000008
[OBKB] human gut metagenome; human gut
8673
8757
+
Leu
TAA
[ENA]
¢þ
>WENV180313062
OBKB01000062
[OBKB] human gut metagenome; human gut
9207
9288
+
Tyr
GTA
[ENA]
¢þ
>WENV180313011
OBKB01000002
[OBKB] human gut metagenome; human gut
11418
11491
+
Asn
GTT
[ENA]
¢þ
>WENV180313074
OBKB01000116
[OBKB] human gut metagenome; human gut
12251
12335
+
Leu
TAG
[ENA]
¢þ
>WENV180313046
OBKB01000019
[OBKB] human gut metagenome; human gut
12320
12236
-
Leu
TAG
[ENA]
¢þ
>WENV180313012
OBKB01000002
[OBKB] human gut metagenome; human gut
12379
12454
+
Pro
TGG
[ENA]
¢þ
>WENV180313045
OBKB01000019
[OBKB] human gut metagenome; human gut
12398
12324
-
Gln
TTG
[ENA]
¢þ
>WENV180313044
OBKB01000019
[OBKB] human gut metagenome; human gut
12554
12478
-
Ile2
CAT
[ENA]
¢þ
>WENV180313036
OBKB01000012
[OBKB] human gut metagenome; human gut
12639
12712
+
Cys
GCA
[ENA]
¢þ
>WENV180313010
OBKB01000001
[OBKB] human gut metagenome; human gut
13494
13420
-
Gln
TTG
[ENA]
¢þ
>WENV180313009
OBKB01000001
[OBKB] human gut metagenome; human gut
13635
13560
-
Lys
TTT
[ENA]
¢þ
>WENV180313008
OBKB01000001
[OBKB] human gut metagenome; human gut
13715
13639
-
His
GTG
[ENA]
¢þ
>WENV180313007
OBKB01000001
[OBKB] human gut metagenome; human gut
13798
13722
-
Arg
TCT
[ENA]
¢þ
>WENV180313056
OBKB01000045
[OBKB] human gut metagenome; human gut
14531
14457
-
Met
CAT
[ENA]
¢þ
>WENV180313055
OBKB01000045
[OBKB] human gut metagenome; human gut
14769
14687
-
Leu
CAA
[ENA]
¢þ
>WENV180313027
OBKB01000008
[OBKB] human gut metagenome; human gut
15608
15683
+
Trp
CCA
[ENA]
¢þ
>WENV180313013
OBKB01000002
[OBKB] human gut metagenome; human gut
15784
15867
+
Tyr
GTA
[ENA]
¢þ
>WENV180313028
OBKB01000008
[OBKB] human gut metagenome; human gut
15870
15946
+
Gly
TCC
[ENA]
¢þ
>WENV180313029
OBKB01000008
[OBKB] human gut metagenome; human gut
16065
16139
+
Gln
TTG
[ENA]
¢þ
>WENV180313030
OBKB01000008
[OBKB] human gut metagenome; human gut
16300
16375
+
Thr
CGT
[ENA]
¢þ
>WENV180313031
OBKB01000008
[OBKB] human gut metagenome; human gut
16603
16678
+
Thr
TGT
[ENA]
¢þ
>WENV180313032
OBKB01000008
[OBKB] human gut metagenome; human gut
16807
16882
+
Pro
TGG
[ENA]
¢þ
>WENV180313065
OBKB01000077
[OBKB] human gut metagenome; human gut
17893
17979
+
Leu
CAG
[ENA]
¢þ
>WENV180313014
OBKB01000002
[OBKB] human gut metagenome; human gut
18855
18943
+
Ser
GCT
[ENA]
¢þ
>WENV180313015
OBKB01000002
[OBKB] human gut metagenome; human gut
18947
19032
+
Ser
TGA
[ENA]
¢þ
>WENV180313039
OBKB01000015
[OBKB] human gut metagenome; human gut
21411
21487
+
Arg
ACG
[ENA]
¢þ
>WENV180313054
OBKB01000042
[OBKB] human gut metagenome; human gut
23056
22971
-
Leu
TAA
[ENA]
¢þ
>WENV180313053
OBKB01000042
[OBKB] human gut metagenome; human gut
23288
23203
-
Tyr
GTA
[ENA]
¢þ
>WENV180313064
OBKB01000063
[OBKB] human gut metagenome; human gut
24910
24826
-
Tyr
GTA
[ENA]
¢þ
>WENV180313063
OBKB01000063
[OBKB] human gut metagenome; human gut
25037
24962
-
Thr
TGT
[ENA]
¢þ
>WENV180313051
OBKB01000029
[OBKB] human gut metagenome; human gut
26894
26966
+
Arg
CCG
[ENA]
¢þ
>WENV180313052
OBKB01000042
[OBKB] human gut metagenome; human gut
27423
27350
-
Trp
CCA
[ENA]
¢þ
>WENV180313034
OBKB01000010
[OBKB] human gut metagenome; human gut
30347
30271
-
Pro
GGG
[ENA]
¢þ
>WENV180313043
OBKB01000017
[OBKB] human gut metagenome; human gut
36016
35930
-
Leu
CAA
[ENA]
¢þ
>WENV180313033
OBKB01000010
[OBKB] human gut metagenome; human gut
45725
45800
+
Trp
CCA
[ENA]
¢þ
>WENV180313042
OBKB01000017
[OBKB] human gut metagenome; human gut
50055
49979
-
Pro
CGG
[ENA]
¢þ
>WENV180313041
OBKB01000017
[OBKB] human gut metagenome; human gut
50161
50088
-
Gln
CTG
[ENA]
¢þ
>WENV180313037
OBKB01000012
[OBKB] human gut metagenome; human gut
50531
50605
+
Met
CAT
[ENA]
¢þ
>WENV180313038
OBKB01000012
[OBKB] human gut metagenome; human gut
50701
50773
+
Arg
CCT
[ENA]
¢þ
>WENV180313019
OBKB01000003
[OBKB] human gut metagenome; human gut
63227
63146
-
Leu
TAG
[ENA]
¢þ
>WENV180313018
OBKB01000003
[OBKB] human gut metagenome; human gut
64625
64551
-
Phe
GAA
[ENA]
¢þ
>WENV180313017
OBKB01000003
[OBKB] human gut metagenome; human gut
66179
66106
-
Ile2
CAT
[ENA]
¢þ
>WENV180313016
OBKB01000003
[OBKB] human gut metagenome; human gut
66675
66604
-
Gln
TTG
[ENA]
¢þ
>WENV180313021
OBKB01000005
[OBKB] human gut metagenome; human gut
93837
93912
+
Thr
GGT
[ENA]
¢þ
>WENV180313020
OBKB01000004
[OBKB] human gut metagenome; human gut
97212
97286
+
Cys
GCA
[ENA]
¢þ
>WENV180313006
OBKB01000001
[OBKB] human gut metagenome; human gut
111279
111354
+
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK