This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBNF] marine metagenome; None
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180355016
OBNF01003404
[OBNF] marine metagenome; None
72
154
+
Leu
TAG
[ENA]
¢þ
>WENV180355022
OBNF01005346
[OBNF] marine metagenome; None
73
-1
-
Gly
TCC
[ENA]
¢þ
>WENV180355030
OBNF01009081
[OBNF] marine metagenome; None
78
150
+
Glu
TTC
[ENA]
¢þ
>WENV180355018
OBNF01003862
[OBNF] marine metagenome; None
81
9
-
Arg
TCT
[ENA]
¢þ
>WENV180355026
OBNF01008194
[OBNF] marine metagenome; None
98
18
-
Arg
CCG
[ENA]
¢þ
>WENV180355012
OBNF01002142
[OBNF] marine metagenome; None
115
186
+
Lys
TTT
[ENA]
¢þ
>WENV180355019
OBNF01003941
[OBNF] marine metagenome; None
162
233
+
Ala
AGC
[ENA]
¢þ
>WENV180355021
OBNF01005346
[OBNF] marine metagenome; None
164
92
-
Lys
TTT
[ENA]
¢þ
>WENV180355014
OBNF01002352
[OBNF] marine metagenome; None
165
237
+
Gly
TCC
[ENA]
¢þ
>WENV180355024
OBNF01006876
[OBNF] marine metagenome; None
179
106
-
Cys
GCA
[ENA]
¢þ
>WENV180355028
OBNF01008277
[OBNF] marine metagenome; None
189
117
-
Met
CAT
[ENA]
¢þ
>WENV180355002
OBNF01000060
[OBNF] marine metagenome; None
197
278
+
Tyr
GTA
[ENA]
¢þ
>WENV180355010
OBNF01000640
[OBNF] marine metagenome; None
201
126
-
Ala
GGC
[ENA]
¢þ
>WENV180355023
OBNF01005352
[OBNF] marine metagenome; None
207
283
+
Ile2
CAT
[ENA]
¢þ
>WENV180355017
OBNF01003862
[OBNF] marine metagenome; None
218
145
-
Val
TAC
[ENA]
¢þ
>WENV180355025
OBNF01007674
[OBNF] marine metagenome; None
227
155
-
Cys
GCA
[ENA]
¢þ
>WENV180355013
OBNF01002142
[OBNF] marine metagenome; None
260
342
+
Tyr
GTA
[ENA]
¢þ
>WENV180355015
OBNF01003401
[OBNF] marine metagenome; None
263
192
-
fMet
CAT
[ENA]
¢þ
>WENV180355027
OBNF01008275
[OBNF] marine metagenome; None
299
228
-
Trp
CCA
[ENA]
¢þ
>WENV180355029
OBNF01008401
[OBNF] marine metagenome; None
304
229
-
Gly
GCC
[ENA]
¢þ
>WENV180355008
OBNF01000440
[OBNF] marine metagenome; None
323
250
-
Arg
TCT
[ENA]
¢þ
>WENV180355011
OBNF01001466
[OBNF] marine metagenome; None
336
409
+
Trp
CCA
[ENA]
¢þ
>WENV180355006
OBNF01000213
[OBNF] marine metagenome; None
367
294
-
Arg
CCG
[ENA]
¢þ
>WENV180355020
OBNF01004276
[OBNF] marine metagenome; None
404
329
-
Trp
CCA
[ENA]
¢þ
>WENV180355004
OBNF01000110
[OBNF] marine metagenome; None
455
526
+
Gly
GCC
[ENA]
¢þ
>WENV180355009
OBNF01000526
[OBNF] marine metagenome; None
497
409
-
Ser
TGA
[ENA]
¢þ
>WENV180355007
OBNF01000292
[OBNF] marine metagenome; None
509
582
+
Arg
TCT
[ENA]
¢þ
>WENV180354999
OBNF01000028
[OBNF] marine metagenome; None
598
527
-
Gln
TTG
[ENA]
¢þ
>WENV180354997
OBNF01000028
[OBNF] marine metagenome; None
635
708
+
Met
CAT
[ENA]
¢þ
>WENV180355005
OBNF01000193
[OBNF] marine metagenome; None
682
756
+
Thr
TGT
[ENA]
¢þ
>WENV180354998
OBNF01000028
[OBNF] marine metagenome; None
716
790
+
His
GTG
[ENA]
¢þ
>WENV180355003
OBNF01000101
[OBNF] marine metagenome; None
764
692
-
Phe
GAA
[ENA]
¢þ
>WENV180355001
OBNF01000057
[OBNF] marine metagenome; None
1019
947
-
Trp
CCA
[ENA]
¢þ
>WENV180354993
OBNF01000001
[OBNF] marine metagenome; None
1116
1192
+
Ile
GAT
[ENA]
¢þ
>WENV180354994
OBNF01000001
[OBNF] marine metagenome; None
1194
1267
+
Ala
TGC
[ENA]
¢þ
>WENV180355000
OBNF01000057
[OBNF] marine metagenome; None
1240
1154
-
Ser
GCT
[ENA]
¢þ
>WENV180354996
OBNF01000011
[OBNF] marine metagenome; None
1954
1881
-
Ile
GAT
[ENA]
¢þ
>WENV180354995
OBNF01000011
[OBNF] marine metagenome; None
2063
1987
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK