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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBQB] marine metagenome; ENVO.00002150
HIT:
109 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180398847
OBQB01005333
[OBQB] marine metagenome; ENVO.00002150
6
90
+
Tyr
GTA
[ENA]
¢þ
>WENV180398884
OBQB01019431
[OBQB] marine metagenome; ENVO.00002150
15
89
+
Ile
GAT
[ENA]
¢þ
>WENV180398912
OBQB01027862
[OBQB] marine metagenome; ENVO.00002150
27
108
+
Leu
TAA
[ENA]
¢þ
>WENV180398905
OBQB01026446
[OBQB] marine metagenome; ENVO.00002150
33
108
+
Ala
TGC
[ENA]
¢þ
>WENV180398878
OBQB01017406
[OBQB] marine metagenome; ENVO.00002150
39
120
+
Ser
AGA
[ENA]
¢þ
>WENV180398893
OBQB01021450
[OBQB] marine metagenome; ENVO.00002150
51
127
+
Met
CAT
[ENA]
¢þ
>WENV180398828
OBQB01002031
[OBQB] marine metagenome; ENVO.00002150
57
131
+
Asn
GTT
[ENA]
¢þ
>WENV180398917
OBQB01031465
[OBQB] marine metagenome; ENVO.00002150
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV180398875
OBQB01015662
[OBQB] marine metagenome; ENVO.00002150
62
138
+
Arg
CCT
[ENA]
¢þ
>WENV180398874
OBQB01015080
[OBQB] marine metagenome; ENVO.00002150
67
141
+
Thr
CGT
[ENA]
¢þ
>WENV180398916
OBQB01030679
[OBQB] marine metagenome; ENVO.00002150
77
2
-
Glu
TTC
[ENA]
¢þ
>WENV180398841
OBQB01003871
[OBQB] marine metagenome; ENVO.00002150
90
14
-
Arg
ACG
[ENA]
¢þ
>WENV180398896
OBQB01022351
[OBQB] marine metagenome; ENVO.00002150
90
163
+
Ile
GAT
[ENA]
¢þ
>WENV180398914
OBQB01028919
[OBQB] marine metagenome; ENVO.00002150
90
166
+
Ile
GAT
[ENA]
¢þ
>WENV180398862
OBQB01009122
[OBQB] marine metagenome; ENVO.00002150
91
19
-
Glu
TTC
[ENA]
¢þ
>WENV180398885
OBQB01019431
[OBQB] marine metagenome; ENVO.00002150
96
170
+
Ala
TGC
[ENA]
¢þ
>WENV180398908
OBQB01026712
[OBQB] marine metagenome; ENVO.00002150
98
174
+
fMet
CAT
[ENA]
¢þ
>WENV180398838
OBQB01002986
[OBQB] marine metagenome; ENVO.00002150
107
196
+
Ser
TGA
[ENA]
¢þ
>WENV180398814
OBQB01000388
[OBQB] marine metagenome; ENVO.00002150
108
33
-
Ala
TGC
[ENA]
¢þ
>WENV180398907
OBQB01026645
[OBQB] marine metagenome; ENVO.00002150
109
35
-
Asn
GTT
[ENA]
¢þ
>WENV180398858
OBQB01008617
[OBQB] marine metagenome; ENVO.00002150
110
184
+
Ala
GGC
[ENA]
¢þ
>WENV180398888
OBQB01020539
[OBQB] marine metagenome; ENVO.00002150
115
189
+
Ile
GAT
[ENA]
¢þ
>WENV180398869
OBQB01011058
[OBQB] marine metagenome; ENVO.00002150
122
46
-
fMet
CAT
[ENA]
¢þ
>WENV180398887
OBQB01019912
[OBQB] marine metagenome; ENVO.00002150
122
196
+
Gly
GCC
[ENA]
¢þ
>WENV180398895
OBQB01022343
[OBQB] marine metagenome; ENVO.00002150
124
208
+
Leu
GAG
[ENA]
¢þ
>WENV180398898
OBQB01023754
[OBQB] marine metagenome; ENVO.00002150
131
56
-
Arg
CCG
[ENA]
¢þ
>WENV180398913
OBQB01027862
[OBQB] marine metagenome; ENVO.00002150
135
207
+
Ile
TAT
[ENA]
¢þ
>WENV180398848
OBQB01005333
[OBQB] marine metagenome; ENVO.00002150
136
209
+
Gly
TCC
[ENA]
¢þ
>WENV180398873
OBQB01014699
[OBQB] marine metagenome; ENVO.00002150
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV180398867
OBQB01010779
[OBQB] marine metagenome; ENVO.00002150
140
211
+
His
GTG
[ENA]
¢þ
>WENV180398881
OBQB01017429
[OBQB] marine metagenome; ENVO.00002150
141
66
-
Ile
GAT
[ENA]
¢þ
>WENV180398831
OBQB01002141
[OBQB] marine metagenome; ENVO.00002150
144
225
+
Ser
TGA
[ENA]
¢þ
>WENV180398910
OBQB01026902
[OBQB] marine metagenome; ENVO.00002150
150
236
+
Leu
CAA
[ENA]
¢þ
>WENV180398911
OBQB01027788
[OBQB] marine metagenome; ENVO.00002150
153
77
-
Asp
GTC
[ENA]
¢þ
>WENV180398901
OBQB01025590
[OBQB] marine metagenome; ENVO.00002150
154
230
+
fMet
CAT
[ENA]
¢þ
>WENV180398865
OBQB01010091
[OBQB] marine metagenome; ENVO.00002150
161
236
+
Thr
GGT
[ENA]
¢þ
>WENV180398915
OBQB01030679
[OBQB] marine metagenome; ENVO.00002150
163
88
-
Ala
GGC
[ENA]
¢þ
>WENV180398897
OBQB01022351
[OBQB] marine metagenome; ENVO.00002150
166
239
+
Ala
TGC
[ENA]
¢þ
>WENV180398906
OBQB01026446
[OBQB] marine metagenome; ENVO.00002150
172
247
+
Val
TAC
[ENA]
¢þ
>WENV180398824
OBQB01001491
[OBQB] marine metagenome; ENVO.00002150
175
250
+
Gly
GCC
[ENA]
¢þ
>WENV180398889
OBQB01020804
[OBQB] marine metagenome; ENVO.00002150
179
104
-
Lys
TTT
[ENA]
¢þ
>WENV180398902
OBQB01025741
[OBQB] marine metagenome; ENVO.00002150
179
254
+
Gln
TTG
[ENA]
¢þ
>WENV180398894
OBQB01021450
[OBQB] marine metagenome; ENVO.00002150
182
266
+
Leu
TAG
[ENA]
¢þ
>WENV180398820
OBQB01001206
[OBQB] marine metagenome; ENVO.00002150
187
113
-
Gly
GCC
[ENA]
¢þ
>WENV180398843
OBQB01003958
[OBQB] marine metagenome; ENVO.00002150
192
116
-
Asp
GTC
[ENA]
¢þ
>WENV180398818
OBQB01000804
[OBQB] marine metagenome; ENVO.00002150
199
272
+
Gly
TCC
[ENA]
¢þ
>WENV180398852
OBQB01006169
[OBQB] marine metagenome; ENVO.00002150
205
114
-
Ser
GCT
[ENA]
¢þ
>WENV180398909
OBQB01026712
[OBQB] marine metagenome; ENVO.00002150
205
280
+
Gly
GCC
[ENA]
¢þ
>WENV180398904
OBQB01025772
[OBQB] marine metagenome; ENVO.00002150
207
132
-
His
GTG
[ENA]
¢þ
>WENV180398810
OBQB01000183
[OBQB] marine metagenome; ENVO.00002150
208
293
+
Tyr
GTA
[ENA]
¢þ
>WENV180398891
OBQB01021145
[OBQB] marine metagenome; ENVO.00002150
209
124
-
Leu
TAA
[ENA]
¢þ
>WENV180398809
OBQB01000040
[OBQB] marine metagenome; ENVO.00002150
216
131
-
Leu
GAG
[ENA]
¢þ
>WENV180398861
OBQB01009122
[OBQB] marine metagenome; ENVO.00002150
216
144
-
Asn
GTT
[ENA]
¢þ
>WENV180398879
OBQB01017406
[OBQB] marine metagenome; ENVO.00002150
222
292
+
Gly
GCC
[ENA]
¢þ
>WENV180398868
OBQB01010933
[OBQB] marine metagenome; ENVO.00002150
222
296
+
Gln
TTG
[ENA]
¢þ
>WENV180398872
OBQB01013081
[OBQB] marine metagenome; ENVO.00002150
223
150
-
Glu
CTC
[ENA]
¢þ
>WENV180398880
OBQB01017429
[OBQB] marine metagenome; ENVO.00002150
229
302
+
Ala
TGC
[ENA]
¢þ
>WENV180398853
OBQB01006307
[OBQB] marine metagenome; ENVO.00002150
230
145
-
Ser
TGA
[ENA]
¢þ
>WENV180398871
OBQB01012866
[OBQB] marine metagenome; ENVO.00002150
231
155
-
Val
GAC
[ENA]
¢þ
>WENV180398833
OBQB01002558
[OBQB] marine metagenome; ENVO.00002150
234
307
+
Gln
TTG
[ENA]
¢þ
>WENV180398849
OBQB01005424
[OBQB] marine metagenome; ENVO.00002150
236
319
+
Leu
CAA
[ENA]
¢þ
>WENV180398883
OBQB01018877
[OBQB] marine metagenome; ENVO.00002150
247
320
+
Asn
GTT
[ENA]
¢þ
>WENV180398857
OBQB01008584
[OBQB] marine metagenome; ENVO.00002150
248
159
-
Ser
CGA
[ENA]
¢þ
>WENV180398846
OBQB01004714
[OBQB] marine metagenome; ENVO.00002150
255
169
-
Leu
TAA
[ENA]
¢þ
>WENV180398877
OBQB01017257
[OBQB] marine metagenome; ENVO.00002150
264
338
+
Arg
TCG
[ENA]
¢þ
>WENV180398886
OBQB01019580
[OBQB] marine metagenome; ENVO.00002150
271
195
-
Val
GAC
[ENA]
¢þ
>WENV180398900
OBQB01024530
[OBQB] marine metagenome; ENVO.00002150
271
344
+
Cys
GCA
[ENA]
¢þ
>WENV180398855
OBQB01008512
[OBQB] marine metagenome; ENVO.00002150
276
204
-
Val
CAC
[ENA]
¢þ
>WENV180398813
OBQB01000388
[OBQB] marine metagenome; ENVO.00002150
279
203
-
Ile
GAT
[ENA]
¢þ
>WENV180398876
OBQB01017033
[OBQB] marine metagenome; ENVO.00002150
281
353
+
Phe
GAA
[ENA]
¢þ
>WENV180398864
OBQB01009576
[OBQB] marine metagenome; ENVO.00002150
285
196
-
Ser
GGA
[ENA]
¢þ
>WENV180398819
OBQB01000804
[OBQB] marine metagenome; ENVO.00002150
287
362
+
Thr
GGT
[ENA]
¢þ
>WENV180398882
OBQB01018158
[OBQB] marine metagenome; ENVO.00002150
290
366
+
Ile2
CAT
[ENA]
¢þ
>WENV180398835
OBQB01002717
[OBQB] marine metagenome; ENVO.00002150
291
367
+
Arg
TCT
[ENA]
¢þ
>WENV180398860
OBQB01009122
[OBQB] marine metagenome; ENVO.00002150
292
217
-
Lys
TTT
[ENA]
¢þ
>WENV180398817
OBQB01000776
[OBQB] marine metagenome; ENVO.00002150
294
370
+
Arg
TCT
[ENA]
¢þ
>WENV180398842
OBQB01003958
[OBQB] marine metagenome; ENVO.00002150
298
223
-
Val
TAC
[ENA]
¢þ
>WENV180398892
OBQB01021322
[OBQB] marine metagenome; ENVO.00002150
299
228
-
Glu
CTC
[ENA]
¢þ
>WENV180398844
OBQB01004525
[OBQB] marine metagenome; ENVO.00002150
299
383
+
Tyr
GTA
[ENA]
¢þ
>WENV180398821
OBQB01001280
[OBQB] marine metagenome; ENVO.00002150
300
224
-
fMet
CAT
[ENA]
¢þ
>WENV180398825
OBQB01001491
[OBQB] marine metagenome; ENVO.00002150
304
377
+
Cys
GCA
[ENA]
¢þ
>WENV180398866
OBQB01010439
[OBQB] marine metagenome; ENVO.00002150
307
382
+
Ala
CGC
[ENA]
¢þ
>WENV180398837
OBQB01002896
[OBQB] marine metagenome; ENVO.00002150
308
397
+
Ser
CGA
[ENA]
¢þ
>WENV180398850
OBQB01005614
[OBQB] marine metagenome; ENVO.00002150
310
394
+
Leu
TAG
[ENA]
¢þ
>WENV180398830
OBQB01002031
[OBQB] marine metagenome; ENVO.00002150
315
243
-
Arg
ACG
[ENA]
¢þ
>WENV180398899
OBQB01024221
[OBQB] marine metagenome; ENVO.00002150
316
240
-
Pro
CGG
[ENA]
¢þ
>WENV180398851
OBQB01005971
[OBQB] marine metagenome; ENVO.00002150
330
405
+
Ala
GGC
[ENA]
¢þ
>WENV180398903
OBQB01025772
[OBQB] marine metagenome; ENVO.00002150
332
256
-
Pro
TGG
[ENA]
¢þ
>WENV180398811
OBQB01000183
[OBQB] marine metagenome; ENVO.00002150
338
411
+
Gly
TCC
[ENA]
¢þ
>WENV180398839
OBQB01003197
[OBQB] marine metagenome; ENVO.00002150
344
272
-
Thr
TGT
[ENA]
¢þ
>WENV180398890
OBQB01020818
[OBQB] marine metagenome; ENVO.00002150
355
280
-
His
GTG
[ENA]
¢þ
>WENV180398870
OBQB01012153
[OBQB] marine metagenome; ENVO.00002150
360
285
-
Glu
TTC
[ENA]
¢þ
>WENV180398822
OBQB01001426
[OBQB] marine metagenome; ENVO.00002150
361
286
-
Lys
TTT
[ENA]
¢þ
>WENV180398840
OBQB01003523
[OBQB] marine metagenome; ENVO.00002150
364
289
-
Thr
TGT
[ENA]
¢þ
>WENV180398859
OBQB01009122
[OBQB] marine metagenome; ENVO.00002150
369
295
-
Arg
TCT
[ENA]
¢þ
>WENV180398856
OBQB01008515
[OBQB] marine metagenome; ENVO.00002150
371
299
-
Lys
TTT
[ENA]
¢þ
>WENV180398836
OBQB01002717
[OBQB] marine metagenome; ENVO.00002150
373
458
+
Leu
TAA
[ENA]
¢þ
>WENV180398863
OBQB01009338
[OBQB] marine metagenome; ENVO.00002150
377
288
-
Ser
GCT
[ENA]
¢þ
>WENV180398854
OBQB01008512
[OBQB] marine metagenome; ENVO.00002150
381
308
-
Glu
CTC
[ENA]
¢þ
>WENV180398834
OBQB01002566
[OBQB] marine metagenome; ENVO.00002150
381
457
+
Arg
CCG
[ENA]
¢þ
>WENV180398812
OBQB01000388
[OBQB] marine metagenome; ENVO.00002150
385
310
-
Ala
TGC
[ENA]
¢þ
>WENV180398829
OBQB01002031
[OBQB] marine metagenome; ENVO.00002150
403
477
+
Val
CAC
[ENA]
¢þ
>WENV180398823
OBQB01001472
[OBQB] marine metagenome; ENVO.00002150
407
483
+
Arg
TCG
[ENA]
¢þ
>WENV180398832
OBQB01002141
[OBQB] marine metagenome; ENVO.00002150
421
336
-
Leu
TAA
[ENA]
¢þ
>WENV180398815
OBQB01000453
[OBQB] marine metagenome; ENVO.00002150
425
500
+
Gly
GCC
[ENA]
¢þ
>WENV180398826
OBQB01001491
[OBQB] marine metagenome; ENVO.00002150
441
527
+
Leu
TAA
[ENA]
¢þ
>WENV180398816
OBQB01000590
[OBQB] marine metagenome; ENVO.00002150
450
525
+
Lys
TTT
[ENA]
¢þ
>WENV180398845
OBQB01004714
[OBQB] marine metagenome; ENVO.00002150
462
389
-
Cys
GCA
[ENA]
¢þ
>WENV180398827
OBQB01001536
[OBQB] marine metagenome; ENVO.00002150
531
457
-
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK