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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBWD] human gut metagenome; faeces
HIT:
145 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180429340
OBWD01003458
[OBWD] human gut metagenome; faeces
25
107
+
Tyr
GTA
[ENA]
¢þ
>WENV180429299
OBWD01000035
[OBWD] human gut metagenome; faeces
30
106
+
Asp
GTC
[ENA]
¢þ
>WENV180429338
OBWD01002713
[OBWD] human gut metagenome; faeces
53
126
+
Trp
CCA
[ENA]
¢þ
>WENV180429368
OBWD01010483
[OBWD] human gut metagenome; faeces
58
139
+
Leu
TAA
[ENA]
¢þ
>WENV180429241
OBWD01000003
[OBWD] human gut metagenome; faeces
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV180429374
OBWD01011667
[OBWD] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180429347
OBWD01005510
[OBWD] human gut metagenome; faeces
77
151
+
Gln
CTG
[ENA]
¢þ
>WENV180429373
OBWD01011625
[OBWD] human gut metagenome; faeces
82
6
-
Asp
GTC
[ENA]
¢þ
>WENV180429357
OBWD01005884
[OBWD] human gut metagenome; faeces
88
15
-
Phe
GAA
[ENA]
¢þ
>WENV180429318
OBWD01001198
[OBWD] human gut metagenome; faeces
99
182
+
Tyr
GTA
[ENA]
¢þ
>WENV180429361
OBWD01006257
[OBWD] human gut metagenome; faeces
102
183
+
Leu
CAG
[ENA]
¢þ
>WENV180429370
OBWD01010706
[OBWD] human gut metagenome; faeces
107
33
-
Arg
ACG
[ENA]
¢þ
>WENV180429359
OBWD01006130
[OBWD] human gut metagenome; faeces
115
188
+
Phe
GAA
[ENA]
¢þ
>WENV180429345
OBWD01005130
[OBWD] human gut metagenome; faeces
116
41
-
Leu
CAA
[ENA]
¢þ
>WENV180429353
OBWD01005848
[OBWD] human gut metagenome; faeces
125
51
-
Pro
CGG
[ENA]
¢þ
>WENV180429329
OBWD01001663
[OBWD] human gut metagenome; faeces
126
53
-
Lys
CTT
[ENA]
¢þ
>WENV180429343
OBWD01003741
[OBWD] human gut metagenome; faeces
131
44
-
Ser
GGA
[ENA]
¢þ
>WENV180429337
OBWD01002492
[OBWD] human gut metagenome; faeces
132
46
-
Ser
CGA
[ENA]
¢þ
>WENV180429332
OBWD01002325
[OBWD] human gut metagenome; faeces
133
205
+
Arg
CCT
[ENA]
¢þ
>WENV180429351
OBWD01005799
[OBWD] human gut metagenome; faeces
137
63
-
Arg
ACG
[ENA]
¢þ
>WENV180429371
OBWD01011225
[OBWD] human gut metagenome; faeces
142
68
-
Gly
GCC
[ENA]
¢þ
>WENV180429372
OBWD01011468
[OBWD] human gut metagenome; faeces
146
75
-
Cys
GCA
[ENA]
¢þ
>WENV180429346
OBWD01005287
[OBWD] human gut metagenome; faeces
154
80
-
Met
CAT
[ENA]
¢þ
>WENV180429330
OBWD01002159
[OBWD] human gut metagenome; faeces
156
241
+
Ser
TGA
[ENA]
¢þ
>WENV180429305
OBWD01000321
[OBWD] human gut metagenome; faeces
158
235
+
Val
TAC
[ENA]
¢þ
>WENV180429366
OBWD01007303
[OBWD] human gut metagenome; faeces
162
88
-
Thr
TGT
[ENA]
¢þ
>WENV180429333
OBWD01002447
[OBWD] human gut metagenome; faeces
163
89
-
Cys
GCA
[ENA]
¢þ
>WENV180429356
OBWD01005884
[OBWD] human gut metagenome; faeces
168
97
-
Gln
CTG
[ENA]
¢þ
>WENV180429341
OBWD01003512
[OBWD] human gut metagenome; faeces
175
101
-
Asn
GTT
[ENA]
¢þ
>WENV180429367
OBWD01007308
[OBWD] human gut metagenome; faeces
180
107
-
fMet
CAT
[ENA]
¢þ
>WENV180429360
OBWD01006190
[OBWD] human gut metagenome; faeces
191
266
+
Gly
GCC
[ENA]
¢þ
>WENV180429350
OBWD01005688
[OBWD] human gut metagenome; faeces
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180429365
OBWD01006908
[OBWD] human gut metagenome; faeces
196
115
-
Leu
TAG
[ENA]
¢þ
>WENV180429364
OBWD01006649
[OBWD] human gut metagenome; faeces
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180429362
OBWD01006257
[OBWD] human gut metagenome; faeces
206
290
+
Leu
GAG
[ENA]
¢þ
>WENV180429369
OBWD01010706
[OBWD] human gut metagenome; faeces
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180429328
OBWD01001663
[OBWD] human gut metagenome; faeces
224
151
-
Lys
CTT
[ENA]
¢þ
>WENV180429363
OBWD01006580
[OBWD] human gut metagenome; faeces
226
302
+
Pro
GGG
[ENA]
¢þ
>WENV180429344
OBWD01003947
[OBWD] human gut metagenome; faeces
229
156
-
Phe
GAA
[ENA]
¢þ
>WENV180429352
OBWD01005822
[OBWD] human gut metagenome; faeces
230
312
+
Leu
TAG
[ENA]
¢þ
>WENV180429355
OBWD01005884
[OBWD] human gut metagenome; faeces
260
174
-
Ser
TGA
[ENA]
¢þ
>WENV180429358
OBWD01005920
[OBWD] human gut metagenome; faeces
273
199
-
fMet
CAT
[ENA]
¢þ
>WENV180429348
OBWD01005599
[OBWD] human gut metagenome; faeces
294
219
-
Asn
GTT
[ENA]
¢þ
>WENV180429319
OBWD01001198
[OBWD] human gut metagenome; faeces
296
368
+
Thr
GGT
[ENA]
¢þ
>WENV180429349
OBWD01005688
[OBWD] human gut metagenome; faeces
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180429342
OBWD01003659
[OBWD] human gut metagenome; faeces
326
241
-
Ser
CGA
[ENA]
¢þ
>WENV180429354
OBWD01005884
[OBWD] human gut metagenome; faeces
342
267
-
Arg
ACG
[ENA]
¢þ
>WENV180429312
OBWD01000805
[OBWD] human gut metagenome; faeces
422
493
+
Gln
TTG
[ENA]
¢þ
>WENV180429339
OBWD01003184
[OBWD] human gut metagenome; faeces
534
609
+
Arg
CCG
[ENA]
¢þ
>WENV180429277
OBWD01000013
[OBWD] human gut metagenome; faeces
567
492
-
Ile2
CAT
[ENA]
¢þ
>WENV180429336
OBWD01002453
[OBWD] human gut metagenome; faeces
677
604
-
Ala
GGC
[ENA]
¢þ
>WENV180429335
OBWD01002453
[OBWD] human gut metagenome; faeces
751
678
-
Ala
TGC
[ENA]
¢þ
>WENV180429304
OBWD01000297
[OBWD] human gut metagenome; faeces
779
708
-
Gln
CTG
[ENA]
¢þ
>WENV180429331
OBWD01002229
[OBWD] human gut metagenome; faeces
825
752
-
Arg
CCT
[ENA]
¢þ
>WENV180429325
OBWD01001495
[OBWD] human gut metagenome; faeces
860
935
+
Lys
TTT
[ENA]
¢þ
>WENV180429334
OBWD01002453
[OBWD] human gut metagenome; faeces
864
790
-
Ile
GAT
[ENA]
¢þ
>WENV180429317
OBWD01001182
[OBWD] human gut metagenome; faeces
878
952
+
Lys
TTT
[ENA]
¢þ
>WENV180429324
OBWD01001482
[OBWD] human gut metagenome; faeces
1119
1045
-
Thr
TGT
[ENA]
¢þ
>WENV180429311
OBWD01000782
[OBWD] human gut metagenome; faeces
1159
1247
+
Ser
GGA
[ENA]
¢þ
>WENV180429309
OBWD01000733
[OBWD] human gut metagenome; faeces
1163
1089
-
Ile2
CAT
[ENA]
¢þ
>WENV180429308
OBWD01000625
[OBWD] human gut metagenome; faeces
1180
1252
+
Glu
TTC
[ENA]
¢þ
>WENV180429323
OBWD01001482
[OBWD] human gut metagenome; faeces
1197
1124
-
His
GTG
[ENA]
¢þ
>WENV180429326
OBWD01001607
[OBWD] human gut metagenome; faeces
1259
1185
-
Ala
GGC
[ENA]
¢þ
>WENV180429322
OBWD01001482
[OBWD] human gut metagenome; faeces
1274
1203
-
Arg
TCG
[ENA]
¢þ
>WENV180429327
OBWD01001612
[OBWD] human gut metagenome; faeces
1292
1366
+
Thr
TGT
[ENA]
¢þ
>WENV180429321
OBWD01001482
[OBWD] human gut metagenome; faeces
1358
1287
-
Gln
TTG
[ENA]
¢þ
>WENV180429316
OBWD01001011
[OBWD] human gut metagenome; faeces
1391
1317
-
Asp
GTC
[ENA]
¢þ
>WENV180429320
OBWD01001426
[OBWD] human gut metagenome; faeces
1393
1320
-
Pro
CGG
[ENA]
¢þ
>WENV180429310
OBWD01000741
[OBWD] human gut metagenome; faeces
1427
1343
-
Leu
CAA
[ENA]
¢þ
>WENV180429307
OBWD01000322
[OBWD] human gut metagenome; faeces
1670
1585
-
Leu
TAA
[ENA]
¢þ
>WENV180429306
OBWD01000322
[OBWD] human gut metagenome; faeces
1759
1686
-
Gly
GCC
[ENA]
¢þ
>WENV180429313
OBWD01000843
[OBWD] human gut metagenome; faeces
1830
1904
+
Ile
GAT
[ENA]
¢þ
>WENV180429315
OBWD01000948
[OBWD] human gut metagenome; faeces
1869
1943
+
Arg
TCT
[ENA]
¢þ
>WENV180429314
OBWD01000843
[OBWD] human gut metagenome; faeces
1919
1993
+
Ala
TGC
[ENA]
¢þ
>WENV180429286
OBWD01000021
[OBWD] human gut metagenome; faeces
2230
2304
+
Arg
CCT
[ENA]
¢þ
>WENV180429303
OBWD01000223
[OBWD] human gut metagenome; faeces
4473
4546
+
Thr
CGT
[ENA]
¢þ
>WENV180429300
OBWD01000037
[OBWD] human gut metagenome; faeces
4848
4932
+
Tyr
GTA
[ENA]
¢þ
>WENV180429301
OBWD01000037
[OBWD] human gut metagenome; faeces
4967
5051
+
Tyr
GTA
[ENA]
¢þ
>WENV180429278
OBWD01000019
[OBWD] human gut metagenome; faeces
8129
8216
+
Ser
GGA
[ENA]
¢þ
>WENV180429294
OBWD01000026
[OBWD] human gut metagenome; faeces
9312
9237
-
Thr
CGT
[ENA]
¢þ
>WENV180429251
OBWD01000006
[OBWD] human gut metagenome; faeces
11529
11604
+
Lys
TTT
[ENA]
¢þ
>WENV180429252
OBWD01000006
[OBWD] human gut metagenome; faeces
11740
11815
+
Val
TAC
[ENA]
¢þ
>WENV180429253
OBWD01000006
[OBWD] human gut metagenome; faeces
11820
11895
+
Lys
TTT
[ENA]
¢þ
>WENV180429254
OBWD01000006
[OBWD] human gut metagenome; faeces
11947
12022
+
Val
TAC
[ENA]
¢þ
>WENV180429255
OBWD01000006
[OBWD] human gut metagenome; faeces
12027
12102
+
Lys
TTT
[ENA]
¢þ
>WENV180429256
OBWD01000006
[OBWD] human gut metagenome; faeces
12249
12324
+
Lys
TTT
[ENA]
¢þ
>WENV180429257
OBWD01000006
[OBWD] human gut metagenome; faeces
12358
12433
+
Lys
TTT
[ENA]
¢þ
>WENV180429302
OBWD01000040
[OBWD] human gut metagenome; faeces
16908
16814
-
SeC
TCA
[ENA]
¢þ
>WENV180429298
OBWD01000032
[OBWD] human gut metagenome; faeces
32157
32082
-
Thr
GGT
[ENA]
¢þ
>WENV180429297
OBWD01000032
[OBWD] human gut metagenome; faeces
32238
32164
-
Gly
TCC
[ENA]
¢þ
>WENV180429296
OBWD01000032
[OBWD] human gut metagenome; faeces
32439
32355
-
Tyr
GTA
[ENA]
¢þ
>WENV180429295
OBWD01000032
[OBWD] human gut metagenome; faeces
32523
32448
-
Thr
TGT
[ENA]
¢þ
>WENV180429276
OBWD01000013
[OBWD] human gut metagenome; faeces
34802
34726
-
Arg
ACG
[ENA]
¢þ
>WENV180429275
OBWD01000013
[OBWD] human gut metagenome; faeces
35077
35001
-
Arg
ACG
[ENA]
¢þ
>WENV180429274
OBWD01000013
[OBWD] human gut metagenome; faeces
35173
35081
-
Ser
GCT
[ENA]
¢þ
>WENV180429259
OBWD01000007
[OBWD] human gut metagenome; faeces
40292
40368
+
fMet
CAT
[ENA]
¢þ
>WENV180429260
OBWD01000007
[OBWD] human gut metagenome; faeces
40402
40478
+
fMet
CAT
[ENA]
¢þ
>WENV180429261
OBWD01000007
[OBWD] human gut metagenome; faeces
40512
40588
+
fMet
CAT
[ENA]
¢þ
>WENV180429292
OBWD01000021
[OBWD] human gut metagenome; faeces
45671
45596
-
Ala
GGC
[ENA]
¢þ
>WENV180429291
OBWD01000021
[OBWD] human gut metagenome; faeces
45786
45711
-
Ala
GGC
[ENA]
¢þ
>WENV180429287
OBWD01000021
[OBWD] human gut metagenome; faeces
48485
48560
+
Val
TAC
[ENA]
¢þ
>WENV180429288
OBWD01000021
[OBWD] human gut metagenome; faeces
48607
48682
+
Val
TAC
[ENA]
¢þ
>WENV180429289
OBWD01000021
[OBWD] human gut metagenome; faeces
48729
48804
+
Val
TAC
[ENA]
¢þ
>WENV180429290
OBWD01000021
[OBWD] human gut metagenome; faeces
48809
48884
+
Lys
TTT
[ENA]
¢þ
>WENV180429266
OBWD01000008
[OBWD] human gut metagenome; faeces
49554
49468
-
Leu
CAG
[ENA]
¢þ
>WENV180429265
OBWD01000008
[OBWD] human gut metagenome; faeces
49675
49589
-
Leu
CAG
[ENA]
¢þ
>WENV180429264
OBWD01000008
[OBWD] human gut metagenome; faeces
49796
49710
-
Leu
CAG
[ENA]
¢þ
>WENV180429285
OBWD01000020
[OBWD] human gut metagenome; faeces
53164
53088
-
Pro
TGG
[ENA]
¢þ
>WENV180429284
OBWD01000020
[OBWD] human gut metagenome; faeces
53293
53207
-
Leu
CAG
[ENA]
¢þ
>WENV180429283
OBWD01000020
[OBWD] human gut metagenome; faeces
53389
53314
-
His
GTG
[ENA]
¢þ
>WENV180429282
OBWD01000020
[OBWD] human gut metagenome; faeces
53524
53448
-
Arg
CCG
[ENA]
¢þ
>WENV180429279
OBWD01000019
[OBWD] human gut metagenome; faeces
56788
56875
+
Ser
TGA
[ENA]
¢þ
>WENV180429293
OBWD01000023
[OBWD] human gut metagenome; faeces
70998
71074
+
Pro
CGG
[ENA]
¢þ
>WENV180429281
OBWD01000020
[OBWD] human gut metagenome; faeces
88068
87993
-
Trp
CCA
[ENA]
¢þ
>WENV180429280
OBWD01000020
[OBWD] human gut metagenome; faeces
88153
88077
-
Asp
GTC
[ENA]
¢þ
>WENV180429242
OBWD01000003
[OBWD] human gut metagenome; faeces
94607
94693
+
Leu
GAG
[ENA]
¢þ
>WENV180429243
OBWD01000003
[OBWD] human gut metagenome; faeces
98476
98552
+
fMet
CAT
[ENA]
¢þ
>WENV180429273
OBWD01000011
[OBWD] human gut metagenome; faeces
104290
104216
-
Gln
CTG
[ENA]
¢þ
>WENV180429272
OBWD01000011
[OBWD] human gut metagenome; faeces
104402
104328
-
Gln
CTG
[ENA]
¢þ
>WENV180429271
OBWD01000011
[OBWD] human gut metagenome; faeces
104527
104451
-
Met
CAT
[ENA]
¢þ
>WENV180429270
OBWD01000011
[OBWD] human gut metagenome; faeces
104617
104543
-
Gln
TTG
[ENA]
¢þ
>WENV180429269
OBWD01000011
[OBWD] human gut metagenome; faeces
104726
104652
-
Gln
TTG
[ENA]
¢þ
>WENV180429268
OBWD01000011
[OBWD] human gut metagenome; faeces
104834
104750
-
Leu
TAG
[ENA]
¢þ
>WENV180429267
OBWD01000011
[OBWD] human gut metagenome; faeces
104920
104844
-
Met
CAT
[ENA]
¢þ
>WENV180429263
OBWD01000007
[OBWD] human gut metagenome; faeces
107900
107827
-
Gly
CCC
[ENA]
¢þ
>WENV180429230
OBWD01000001
[OBWD] human gut metagenome; faeces
118507
118583
+
Val
GAC
[ENA]
¢þ
>WENV180429231
OBWD01000001
[OBWD] human gut metagenome; faeces
118588
118664
+
Val
GAC
[ENA]
¢þ
>WENV180429250
OBWD01000005
[OBWD] human gut metagenome; faeces
149283
149208
-
Phe
GAA
[ENA]
¢þ
>WENV180429246
OBWD01000005
[OBWD] human gut metagenome; faeces
178138
178213
+
Gly
GCC
[ENA]
¢þ
>WENV180429247
OBWD01000005
[OBWD] human gut metagenome; faeces
178371
178446
+
Gly
GCC
[ENA]
¢þ
>WENV180429248
OBWD01000005
[OBWD] human gut metagenome; faeces
178482
178557
+
Gly
GCC
[ENA]
¢þ
>WENV180429244
OBWD01000003
[OBWD] human gut metagenome; faeces
198816
198741
-
Ile2
CAT
[ENA]
¢þ
>WENV180429258
OBWD01000006
[OBWD] human gut metagenome; faeces
207984
207897
-
Ser
GGA
[ENA]
¢þ
>WENV180429262
OBWD01000007
[OBWD] human gut metagenome; faeces
232211
232286
+
Phe
GAA
[ENA]
¢þ
>WENV180429240
OBWD01000002
[OBWD] human gut metagenome; faeces
269629
269705
+
Pro
GGG
[ENA]
¢þ
>WENV180429249
OBWD01000005
[OBWD] human gut metagenome; faeces
285005
285089
+
Leu
CAA
[ENA]
¢þ
>WENV180429245
OBWD01000004
[OBWD] human gut metagenome; faeces
298578
298654
+
Arg
TCT
[ENA]
¢þ
>WENV180429239
OBWD01000001
[OBWD] human gut metagenome; faeces
362630
362544
-
Leu
TAA
[ENA]
¢þ
>WENV180429238
OBWD01000001
[OBWD] human gut metagenome; faeces
362716
362643
-
Cys
GCA
[ENA]
¢þ
>WENV180429237
OBWD01000001
[OBWD] human gut metagenome; faeces
362846
362771
-
Gly
GCC
[ENA]
¢þ
>WENV180429236
OBWD01000001
[OBWD] human gut metagenome; faeces
413657
413568
-
Ser
CGA
[ENA]
¢þ
>WENV180429232
OBWD01000001
[OBWD] human gut metagenome; faeces
414649
414724
+
Asn
GTT
[ENA]
¢þ
>WENV180429235
OBWD01000001
[OBWD] human gut metagenome; faeces
429108
429033
-
Asn
GTT
[ENA]
¢þ
>WENV180429233
OBWD01000001
[OBWD] human gut metagenome; faeces
430857
430932
+
Asn
GTT
[ENA]
¢þ
>WENV180429234
OBWD01000001
[OBWD] human gut metagenome; faeces
433265
433340
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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