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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Atribacteria
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>W1510076786
CDPL01000121
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
1769
1682
-
Ser
TGA
[ENA]
¡û
>W1510076775
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
1798
1873
+
Ala
GGC
[ENA]
¡û
>W1510076783
CDPL01000101
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
3517
3592
+
Val
TAC
[ENA]
¡û
>W1510076776
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5487
5562
+
Val
TAC
[ENA]
¡û
>W1510076774
CDPL01000020
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5546
5633
+
Ser
TGA
[ENA]
¡û
>W1510076777
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5581
5659
+
Asp
GTC
[ENA]
¡û
>W1510076778
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5692
5767
+
Phe
GAA
[ENA]
¡û
>W1510076779
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5784
5858
+
Gly
GCC
[ENA]
¡û
>W1510076780
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5877
5950
+
Cys
GCA
[ENA]
¡û
>W1530001511
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
5982
6056
+
Val
GAC
[ENA]
¡û
>W1510076785
CDPL01000120
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
7812
7737
-
Ala
TGC
[ENA]
¡û
>W1510076784
CDPL01000120
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
8008
7932
-
Ile
GAT
[ENA]
¡û
>W1510076781
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
23967
24043
+
Ile
GAT
[ENA]
¡û
>W1510076782
CDPL01000047
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPL]
24163
24238
+
Ala
TGC
[ENA]
¡û
>W1510076789
CDPM01000030
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
70
163
+
Ser
GGA
[ENA]
¡û
>W1510076790
CDPM01000181
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
390
466
+
Met
CAT
[ENA]
¡û
>W1510076791
CDPM01000201
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
2117
2202
+
Leu
GAG
[ENA]
¡û
>W1510076794
CDPM01000288
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
3150
3075
-
Gly
CCC
[ENA]
¡û
>W1510076792
CDPM01000229
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
4811
4904
+
Ser
GCT
[ENA]
¡û
>W1510076793
CDPM01000229
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
9729
9805
+
Arg
ACG
[ENA]
¡û
>W1510076788
CDPM01000020
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
9997
9922
-
Ala
TGC
[ENA]
¡û
>W1510076787
CDPM01000020
Atribacteria
Atribacteria bacterium JGI 0000014-F07 [CDPM]
10261
10185
-
Ile
GAT
[ENA]
¡û
>W141139552
AWNT01000047
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
404
330
-
Glu
CTC
[ENA]
¡û
>W141139534
AWNT01000001
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
606
680
+
Asn
GTT
[ENA]
¡û
>W141139553
AWNT01000053
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
621
708
+
Ser
TGA
[ENA]
¡û
>W141139551
AWNT01000047
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
648
575
-
Gln
CTG
[ENA]
¡û
>W141139541
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
1280
1355
+
Val
TAC
[ENA]
¡û
>W141139542
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
1375
1453
+
Asp
GTC
[ENA]
¡û
>W141139543
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
1492
1567
+
Phe
GAA
[ENA]
¡û
>W141139544
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
1576
1650
+
Gly
GCC
[ENA]
¡û
>W141139545
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
1671
1744
+
Cys
GCA
[ENA]
¡û
>W143002812
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
1788
1862
+
Val
GAC
[ENA]
¡û
>W141139554
AWNT01000072
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
3779
3854
+
Met
CAT
[ENA]
¡û
>W141139550
AWNT01000031
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
11697
11783
+
Leu
CAG
[ENA]
¡û
>W141139548
AWNT01000012
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
12493
12417
-
Arg
CCG
[ENA]
¡û
>W141139549
AWNT01000026
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
21267
21342
+
Gly
CCC
[ENA]
¡û
>W141139536
AWNT01000005
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
21744
21832
+
Leu
TAA
[ENA]
¡û
>W141139537
AWNT01000005
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
21930
22006
+
Met
CAT
[ENA]
¡û
>W141139538
AWNT01000005
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
22428
22504
+
Met
CAT
[ENA]
¡û
>W141139535
AWNT01000004
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
24377
24289
-
Leu
CAA
[ENA]
¡û
>W141139539
AWNT01000005
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
33767
33842
+
Arg
CCT
[ENA]
¡û
>W141139547
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
42524
42449
-
Ala
TGC
[ENA]
¡û
>W141139546
AWNT01000010
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
42735
42659
-
Ile
GAT
[ENA]
¡û
>W141139540
AWNT01000005
Atribacteria
Atribacteria bacterium JGI OTU-1 [AWNT]
47270
47356
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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