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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
CandidatusBathyarchaeota
HIT:
24 sequence(s).
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb"
(1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006"
.
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008"
.
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
>W1911809273
QYYE01000092
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
82
8
-
Gln
TTG
[ENA]
--
¡û
>W1930040553
QYYE01000172
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
210
134
-
Thr
GGT
[ENA]
--
¡û
>W1911809271
QYYE01000068
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
356
270
-
Ser
GCT
[ENA]
--
¡û
>W1911809279
QYYE01000172
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
390
477
+
Leu
TAG
[ENA]
--
¡û
>W1911809278
QYYE01000152
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
710
787
+
Ile
GAT
[ENA]
--
¡û
>W1911809264
QYYE01000027
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
1298
1375
+
Met
CAT
[ENA]
--
¡û
>W1911809269
QYYE01000067
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
2250
2327
+
Ala
GGC
[ENA]
--
¡û
>W1911809270
QYYE01000068
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
3177
3102
-
His
GTG
[ENA]
--
¡û
>W1911809277
QYYE01000121
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
4569
4495
-
Ala
TGC
[ENA]
--
¡û
>W1911809276
QYYE01000119
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
4860
4784
-
Phe
GAA
[ENA]
--
¡û
>W1911809274
QYYE01000110
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
4981
4903
-
Arg
GCG
[ENA]
--
¡û
>W1911809275
QYYE01000119
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
5017
5093
+
Val
CAC
[ENA]
--
¡û
>W1911809268
QYYE01000058
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
5378
5292
-
Ser
TGA
[ENA]
--
¡û
>W1911809262
QYYE01000025
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
6785
6862
+
Pro
TGG
[ENA]
--
¡û
>W1911809259
QYYE01000006
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
7530
7607
+
Val
TAC
[ENA]
--
¡û
>W1911809272
QYYE01000072
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
8681
8594
-
Leu
CAG
[ENA]
--
¡û
>W1911809261
QYYE01000019
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
9126
9203
+
Gly
GCC
[ENA]
--
¡û
>W1911809267
QYYE01000051
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
11384
11310
-
Pro
CGG
[ENA]
--
¡û
>W1911809263
QYYE01000026
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
12670
12748
+
Arg
TCG
[ENA]
--
¡û
>W1911809266
QYYE01000043
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
14401
14478
+
Lys
CTT
[ENA]
--
¡û
>W1911809265
QYYE01000034
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
15640
15718
+
Gly
TCC
[ENA]
--
¡û
>W1911809260
QYYE01000013
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
19223
19301
+
Arg
CCG
[ENA]
--
¡û
>W1911809258
QYYE01000005
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
22851
22777
-
Gln
CTG
[ENA]
--
¡û
>W1911809257
QYYE01000001
CandidatusBathyarchaeota
Candidatus Bathyarchaeota archaeon BE326-BA-RLH (QYYE)
40463
40376
-
Leu
GAG
[ENA]
--
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
Download Sequence
View ClustalW result
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