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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
CandidatusHandelsmanbacteria
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>W1910709477
MFKF01000024
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
82
156
+
Gly
CCC
[ENA]
¡û
>W1910709501
MFKF01000317
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
296
221
-
Arg
ACG
[ENA]
¡û
>W1910709487
MFKF01000131
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
676
749
+
Met
CAT
[ENA]
¡û
>W1910709488
MFKF01000131
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
857
931
+
Val
CAC
[ENA]
¡û
>W1910709478
MFKF01000044
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
938
1012
+
Glu
CTC
[ENA]
¡û
>W1910709499
MFKF01000303
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
1032
959
-
Gly
GCC
[ENA]
¡û
>W1910709496
MFKF01000254
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
1140
1066
-
Lys
TTT
[ENA]
¡û
>W1910709504
MFKF01000350
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
1302
1375
+
Ile
TAT
[ENA]
¡û
>W1910709486
MFKF01000128
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
1432
1350
-
Leu
GAG
[ENA]
¡û
>W1910709481
MFKF01000062
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
2329
2419
+
Ser
CGA
[ENA]
¡û
>W1910709491
MFKF01000147
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
2406
2330
-
Pro
TGG
[ENA]
¡û
>W1910709503
MFKF01000328
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
2419
2333
-
Leu
TAA
[ENA]
¡û
>W1910709502
MFKF01000328
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
2501
2426
-
Cys
GCA
[ENA]
¡û
>W1910709482
MFKF01000062
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
2519
2607
+
Ser
GGA
[ENA]
¡û
>W1910709507
MFKF01000366
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
2556
2630
+
Thr
CGT
[ENA]
¡û
>W1910709483
MFKF01000062
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
3071
3146
+
Ala
CGC
[ENA]
¡û
>W1910709495
MFKF01000202
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
3173
3098
-
Thr
TGT
[ENA]
¡û
>W1910709490
MFKF01000137
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
4465
4539
+
Arg
CCG
[ENA]
¡û
>W1910709492
MFKF01000184
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
5438
5513
+
Gly
GCC
[ENA]
¡û
>W1910709489
MFKF01000132
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
5566
5482
-
Leu
TAG
[ENA]
¡û
>W1910709484
MFKF01000073
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
6589
6516
-
Gln
CTG
[ENA]
¡û
>W1910709500
MFKF01000305
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
9458
9382
-
Pro
CGG
[ENA]
¡û
>W1910709494
MFKF01000188
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
9774
9850
+
Arg
TCG
[ENA]
¡û
>W1910709479
MFKF01000057
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
10803
10728
-
Lys
CTT
[ENA]
¡û
>W1910709509
MFKF01000428
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
11013
11100
+
Leu
GAG
[ENA]
¡û
>W1910709506
MFKF01000365
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
11260
11336
+
Arg
CCT
[ENA]
¡û
>W1910709497
MFKF01000266
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
12500
12424
-
Met
CAT
[ENA]
¡û
>W1910709485
MFKF01000127
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
13913
13999
+
Ser
TGA
[ENA]
¡û
>W1910709475
MFKF01000023
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
18558
18634
+
Asp
GTC
[ENA]
¡û
>W1910709480
MFKF01000061
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
18640
18737
+
Sec
TCA
[ENA]
¡û
>W1910709493
MFKF01000184
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
22780
22850
+
Gln
TTG
[ENA]
¡û
>W1910709508
MFKF01000427
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
36620
36695
+
Ala
GGC
[ENA]
¡û
>W1910709498
MFKF01000279
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
38708
38782
+
Asn
GTT
[ENA]
¡û
>W1910709505
MFKF01000360
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
39545
39620
+
Phe
GAA
[ENA]
¡û
>W1910709476
MFKF01000023
CandidatusHandelsmanbacteria
Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10 (MFKF)
64307
64379
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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