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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Euryarchaeota
HIT:
8 sequence(s).
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb"
(1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006"
.
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008"
.
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
>PL171000368
CP002063
Euryarchaeota
Halalkalicoccus jeotgali B3 plasmid:1
167895
167968
+
Thr
TGT
[ENA]
--
¡û
>PL171000209
AY596295
Euryarchaeota
Haloarcula marismortui ATCC 43049 plasmid:pNG600
50860
50782
-
Pseudo
CTC
[ENA]
--
¡û
>PL171001789
LN831305
Euryarchaeota
Halobacterium hubeiense JI20-1 plasmid:pSTJ003
39014
38936
-
Glu
CTC
[ENA]
--
¡û
>PL171000844
CP011949
Euryarchaeota
Haloferax gibbonsii ARA6 plasmid:pHG2
30836
30760
-
Met
CAT
[ENA]
--
¡û
>PL171000343
CP001870
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 plasmid:pHM300
241679
241595
-
Ser
GGA
[ENA]
--
¡û
>PL171000651
CP007553
Euryarchaeota
Haloferax mediterranei ATCC 33500 plasmid:HMPLAS2
28717
28801
+
Ser
GGA
[ENA]
--
¡û
>PL171000511
CP003363
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 plasmid:pMETHO01
277761
277688
-
Gln
TTG
[ENA]
--
¡û
>PL171000345
CP001933
Euryarchaeota
Natrialba magadii ATCC 43099 plasmid:pNMAG01
372914
372841
-
Ala
TGC
[ENA]
--
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
Download Sequence
View ClustalW result
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