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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV08001522
ABNG01002864
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
4
78
+
Asp
GTC
[ENA]
¡û
>ENV08001523
ABNG01003556
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
28
120
+
Ser
GCT
[ENA]
¡û
>ENV08001524
ABNG01009897
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
35
111
+
Met
CAT
[ENA]
¡û
>ENV08001525
ABNG01016601
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
92
15
-
Gly
TCC
[ENA]
¡û
>ENV08001526
ABNG01016697
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
103
27
-
His
GTG
[ENA]
¡û
>ENV08001527
ABNG01019465
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
102
27
-
Ala
CGC
[ENA]
¡û
>ENV08001528
ABNG01032890
freshwater metagenome; microbial fraction from prebead pond at Kent SeaTech (Salton Sea, CA)
13
88
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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