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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV08000001
ABLU01008679
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
57
133
+
Cys
GCA
[ENA]
¡û
>ENV08000002
ABLU01009365
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
111
19
-
Ser
CGA
[ENA]
¡û
>ENV08000003
ABLU01009627
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
3
78
+
His
GTG
[ENA]
¡û
>ENV08000004
ABLU01010543
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
119
32
-
Ser
TGA
[ENA]
¡û
>ENV08000005
ABLU01012896
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
94
4
-
Ser
CGA
[ENA]
¡û
>ENV08000006
ABLU01016968
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
11
101
+
Ser
CGA
[ENA]
¡û
>ENV08000007
ABLU01018147
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
128
54
-
Gly
GCC
[ENA]
¡û
>ENV08000008
ABLU01018826
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
79
4
-
Glu
CTC
[ENA]
¡û
>ENV08000009
ABLU01020117
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
127
53
-
Gly
GCC
[ENA]
¡û
>ENV08000010
ABLU01020860
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
127
51
-
Pro
GGG
[ENA]
¡û
>ENV08000011
ABLU01025177
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
105
30
-
Lys
CTT
[ENA]
¡û
>ENV08000012
ABLU01028071
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
125
35
-
Ser
GGA
[ENA]
¡û
>ENV08000013
ABLU01030421
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
126
34
-
Ser
GCT
[ENA]
¡û
>ENV08000014
ABLU01031097
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
80
9
-
Cys
GCA
[ENA]
¡û
>ENV08000015
ABLU01031459
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
78
2
-
Ile
GAT
[ENA]
¡û
>ENV08000016
ABLU01032648
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
5
81
+
Met
CAT
[ENA]
¡û
>ENV08000017
ABLU01033240
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
120
44
-
Gly
TCC
[ENA]
¡û
>ENV08000018
ABLU01033922
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
120
44
-
Gly
TCC
[ENA]
¡û
>ENV08000019
ABLU01034000
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
20
96
+
Val
TAC
[ENA]
¡û
>ENV08000020
ABLU01034420
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
12
101
+
Ser
TGA
[ENA]
¡û
>ENV08000021
ABLU01034570
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
104
14
-
Ser
GGA
[ENA]
¡û
>ENV08000022
ABLU01038661
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
118
43
-
Gly
TCC
[ENA]
¡û
>ENV08000023
ABLU01039013
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
8
97
+
Ser
GCT
[ENA]
¡û
>ENV08000024
ABLU01042881
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
117
42
-
Gly
TCC
[ENA]
¡û
>ENV08000025
ABLU01044886
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
93
16
-
Glu
TTC
[ENA]
¡û
>ENV08000026
ABLU01045209
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
10
86
+
Met
CAT
[ENA]
¡û
>ENV08000027
ABLU01046037
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
111
34
-
Asp
GTC
[ENA]
¡û
>ENV08000028
ABLU01050262
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
37
113
+
Met
CAT
[ENA]
¡û
>ENV08000029
ABLU01052014
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
1
77
+
Met
CAT
[ENA]
¡û
>ENV08000030
ABLU01052648
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
26
101
+
Lys
TTT
[ENA]
¡û
>ENV08000031
ABLU01053340
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
116
26
-
Ser
TGA
[ENA]
¡û
>ENV08000032
ABLU01055103
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
80
6
-
Glu
TTC
[ENA]
¡û
>ENV08000033
ABLU01055589
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
98
7
-
Ser
TGA
[ENA]
¡û
>ENV08000034
ABLU01055718
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
40
114
+
Gln
TTG
[ENA]
¡û
>ENV08000035
ABLU01057830
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
79
3
-
Ala
GGC
[ENA]
¡û
>ENV08000036
ABLU01060905
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
97
7
-
Ser
TGA
[ENA]
¡û
>ENV08000037
ABLU01067039
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
14
88
+
Val
TAC
[ENA]
¡û
>ENV08000038
ABLU01069156
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
22
111
+
Ser
GCT
[ENA]
¡û
>ENV08000039
ABLU01069990
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
79
5
-
Val
GAC
[ENA]
¡û
>ENV08000040
ABLU01070051
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
111
38
-
Gly
CCC
[ENA]
¡û
>ENV08000041
ABLU01072851
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
5
81
+
Ile
GAT
[ENA]
¡û
>ENV08000042
ABLU01073959
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
32
107
+
Gly
GCC
[ENA]
¡û
>ENV08000043
ABLU01075727
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
100
24
-
Met
CAT
[ENA]
¡û
>ENV08000044
ABLU01076868
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
94
18
-
Asp
GTC
[ENA]
¡û
>ENV08000045
ABLU01078590
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
100
25
-
Ala
TGC
[ENA]
¡û
>ENV08000046
ABLU01081586
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
21
97
+
Asp
GTC
[ENA]
¡û
>ENV08000047
ABLU01082593
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
12
89
+
Met
CAT
[ENA]
¡û
>ENV08000048
ABLU01082955
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
91
17
-
Cys
GCA
[ENA]
¡û
>ENV08000049
ABLU01083773
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
114
38
-
Met
CAT
[ENA]
¡û
>ENV08000050
ABLU01084439
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
99
23
-
Met
CAT
[ENA]
¡û
>ENV08000051
ABLU01087329
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
22
111
+
Ser
CGA
[ENA]
¡û
>ENV08000052
ABLU01091377
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
83
7
-
Pro
CGG
[ENA]
¡û
>ENV08000053
ABLU01091597
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
108
22
-
Leu
GAG
[ENA]
¡û
>ENV08000054
ABLU01091726
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
98
22
-
Arg
TCG
[ENA]
¡û
>ENV08000055
ABLU01093019
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
79
5
-
Asn
GTT
[ENA]
¡û
>ENV08000056
ABLU01093189
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
31
105
+
Ala
TGC
[ENA]
¡û
>ENV08000057
ABLU01093469
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
25
102
+
Lys
TTT
[ENA]
¡û
>ENV08000058
ABLU01094899
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
40
113
+
Cys
GCA
[ENA]
¡û
>ENV08000059
ABLU01095846
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
24
100
+
His
GTG
[ENA]
¡û
>ENV08000060
ABLU01100664
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
2
86
+
Leu
GAG
[ENA]
¡û
>ENV08000061
ABLU01106789
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
92
16
-
Pro
CGG
[ENA]
¡û
>ENV08000062
ABLU01111694
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
104
28
-
Gly
GCC
[ENA]
¡û
>ENV08000063
ABLU01114674
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
20
109
+
Ser
GGA
[ENA]
¡û
>ENV08000064
ABLU01124545
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
37
110
+
Val
CAC
[ENA]
¡û
>ENV08000065
ABLU01127399
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
14
90
+
Met
CAT
[ENA]
¡û
>ENV08000066
ABLU01127968
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
17
93
+
Arg
CCG
[ENA]
¡û
>ENV08000067
ABLU01128201
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
76
2
-
Lys
CTT
[ENA]
¡û
>ENV08000068
ABLU01133955
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
2
78
+
Met
CAT
[ENA]
¡û
>ENV08000069
ABLU01136832
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
96
25
-
Cys
GCA
[ENA]
¡û
>ENV08000070
ABLU01137976
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
15
90
+
Met
CAT
[ENA]
¡û
>ENV08000071
ABLU01143348
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
88
13
-
His
GTG
[ENA]
¡û
>ENV08000072
ABLU01150794
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
105
30
-
Val
TAC
[ENA]
¡û
>ENV08000073
ABLU01153052
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
13
96
+
Tyr
GTA
[ENA]
¡û
>ENV08000074
ABLU01158032
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
4
79
+
Val
TAC
[ENA]
¡û
>ENV08000075
ABLU01160253
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
91
16
-
Phe
GAA
[ENA]
¡û
>ENV08000076
ABLU01161951
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
24
99
+
Lys
TTT
[ENA]
¡û
>ENV08000077
ABLU01162644
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
105
31
-
Met
CAT
[ENA]
¡û
>ENV08000078
ABLU01164484
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
84
9
-
His
GTG
[ENA]
¡û
>ENV08000079
ABLU01165881
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
86
10
-
Met
CAT
[ENA]
¡û
>ENV08000080
ABLU01176511
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
11
94
+
Tyr
GTA
[ENA]
¡û
>ENV08000081
ABLU01177651
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
16
92
+
Arg
TCT
[ENA]
¡û
>ENV08000082
ABLU01183212
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
79
4
-
Val
TAC
[ENA]
¡û
>ENV08000083
ABLU01187132
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
17
101
+
Leu
GAG
[ENA]
¡û
>ENV08000084
ABLU01187407
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
7
82
+
Val
TAC
[ENA]
¡û
>ENV08000085
ABLU01198254
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
76
1
-
Phe
GAA
[ENA]
¡û
>ENV08000086
ABLU01210171
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
90
15
-
Arg
CCG
[ENA]
¡û
>ENV08000087
ABLU01216962
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
1
76
+
Val
GAC
[ENA]
¡û
>ENV08000088
ABLU01216967
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
14
90
+
Arg
ACG
[ENA]
¡û
>ENV08000089
ABLU01234125
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
17
91
+
Val
GAC
[ENA]
¡û
>ENV08000090
ABLU01237529
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
15
91
+
Arg
ACG
[ENA]
¡û
>ENV08000091
ABLU01245893
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
19
95
+
Arg
CCG
[ENA]
¡û
>ENV08000092
ABLU01259013
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
15
90
+
Phe
GAA
[ENA]
¡û
>ENV08000093
ABLU01282182
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
12
85
+
Ile
GAT
[ENA]
¡û
>ENV08000094
ABLU01285092
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
4
79
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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