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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV08001197
ABMU01007124
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
5
91
+
Leu
TAA
[ENA]
¡û
>ENV08001198
ABMU01009694
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
15
87
+
Sup
CTA
[ENA]
¡û
>ENV08001199
ABMU01012084
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
15
87
+
Sup
CTA
[ENA]
¡û
>ENV08001200
ABMU01014769
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
87
9
-
Arg
TCT
[ENA]
¡û
>ENV08001201
ABMU01021026
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
30
105
+
Arg
TCT
[ENA]
¡û
>ENV08001202
ABMU01028865
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
32
106
+
Arg
CCT
[ENA]
¡û
>ENV08001203
ABMU01029165
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
36
-
Ile
TAT
[ENA]
¡û
>ENV08001204
ABMU01030530
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
82
+
Pro
TGG
[ENA]
¡û
>ENV08001205
ABMU01066382
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
32
108
+
Arg
TCT
[ENA]
¡û
>ENV08001206
ABMU01067043
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
18
100
+
Tyr
GTA
[ENA]
¡û
>ENV08001207
ABMU01086184
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
72
1
-
Pseudo
TTC
[ENA]
¡û
>ENV08001208
ABMU01086495
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
82
8
-
Val
GAC
[ENA]
¡û
>ENV08001209
ABMU01088719
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
97
22
-
Arg
TCT
[ENA]
¡û
>ENV08001210
ABMU01089051
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
93
20
-
Arg
CCT
[ENA]
¡û
>ENV08001211
ABMU01091272
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
21
95
+
Gly
GCC
[ENA]
¡û
>ENV08001212
ABMU01095793
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
72
1
-
Pseudo
GAT
[ENA]
¡û
>ENV08001213
ABMU01099617
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
105
31
-
His
GTG
[ENA]
¡û
>ENV08001214
ABMU01100397
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
100
29
-
Ala
GGC
[ENA]
¡û
>ENV08001215
ABMU01105762
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
100
24
-
Ile
GAT
[ENA]
¡û
>ENV08001216
ABMU01125063
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
83
7
-
Pro
TGG
[ENA]
¡û
>ENV08001217
ABMU01125335
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
86
12
-
Gly
GCC
[ENA]
¡û
>ENV08001218
ABMU01141879
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
3
78
+
Arg
ACG
[ENA]
¡û
>ENV08001219
ABMU01145711
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
82
+
Lys
CTT
[ENA]
¡û
>ENV08001220
ABMU01153854
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
78
4
-
Ile
TAT
[ENA]
¡û
>ENV08001221
ABMU01203419
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
2
89
+
Leu
TAG
[ENA]
¡û
>ENV08001222
ABMV01004113
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
115
43
-
Glu
TTC
[ENA]
¡û
>ENV08001223
ABMV01010530
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
79
5
-
His
GTG
[ENA]
¡û
>ENV08001224
ABMV01017194
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
34
110
+
Ile
GAT
[ENA]
¡û
>ENV08001225
ABMV01017794
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
16
88
+
Gln
TTG
[ENA]
¡û
>ENV08001226
ABMV01018425
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
31
-
Ala
CGC
[ENA]
¡û
>ENV08001227
ABMV01018898
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
122
50
-
Phe
GAA
[ENA]
¡û
>ENV08001228
ABMV01022905
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
26
113
+
Pseudo
TGA
[ENA]
¡û
>ENV08001229
ABMV01022982
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
13
112
+
SeC
TCA
[ENA]
¡û
>ENV08001230
ABMV01025965
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
17
91
+
Lys
TTT
[ENA]
¡û
>ENV08001231
ABMV01026701
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
112
40
-
Pseudo
TTG
[ENA]
¡û
>ENV08001232
ABMV01028903
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
88
4
-
Leu
GAG
[ENA]
¡û
>ENV08001233
ABMV01031832
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
25
-
Leu
TAA
[ENA]
¡û
>ENV08001234
ABMV01032877
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
79
+
Gln
TTG
[ENA]
¡û
>ENV08001235
ABMV01033231
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
96
22
-
Arg
CCG
[ENA]
¡û
>ENV08001236
ABMV01033342
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
31
-
Pro
TGG
[ENA]
¡û
>ENV08001237
ABMV01034865
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
23
-
Leu
GAG
[ENA]
¡û
>ENV08001238
ABMV01035226
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
103
26
-
Glu
TTC
[ENA]
¡û
>ENV08001239
ABMV01035967
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
44
116
+
Ala
CGC
[ENA]
¡û
>ENV08001240
ABMV01037480
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
95
22
-
Asp
GTC
[ENA]
¡û
>ENV08001241
ABMV01040971
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
105
30
-
Asn
GTT
[ENA]
¡û
>ENV08001242
ABMV01044712
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
110
24
-
Leu
CAA
[ENA]
¡û
>ENV08001243
ABMV01046959
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
27
101
+
Arg
CCG
[ENA]
¡û
>ENV08001244
ABMV01047248
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
83
9
-
Pro
CGG
[ENA]
¡û
>ENV08001245
ABMV01051881
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
23
98
+
Ala
GGC
[ENA]
¡û
>ENV08001246
ABMV01052421
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
19
-
Ser
GCT
[ENA]
¡û
>ENV08001247
ABMV01056236
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
108
35
-
Gln
CTG
[ENA]
¡û
>ENV08001248
ABMV01060000
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
2
77
+
Thr
CGT
[ENA]
¡û
>ENV08001249
ABMV01062384
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
33
-
Ala
CGC
[ENA]
¡û
>ENV08001250
ABMV01068268
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
39
114
+
Arg
TCG
[ENA]
¡û
>ENV08001251
ABMV01071359
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
17
-
Ser
GGA
[ENA]
¡û
>ENV08001252
ABMV01072535
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
16
87
+
Gly
TCC
[ENA]
¡û
>ENV08001253
ABMV01072934
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
84
12
-
Lys
TTT
[ENA]
¡û
>ENV08001254
ABMV01081979
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
89
14
-
Lys
CTT
[ENA]
¡û
>ENV08001255
ABMV01082835
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
28
100
+
Asn
GTT
[ENA]
¡û
>ENV08001256
ABMV01087098
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
19
93
+
Trp
CCA
[ENA]
¡û
>ENV08001257
ABMV01092368
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
95
24
-
Glu
CTC
[ENA]
¡û
>ENV08001258
ABMV01093584
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
81
7
-
Pro
TGG
[ENA]
¡û
>ENV08001259
ABMV01095774
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
7
96
+
Ser
GGA
[ENA]
¡û
>ENV08001260
ABMV01096589
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
82
10
-
Gly
GCC
[ENA]
¡û
>ENV08001261
ABMV01097527
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
106
32
-
Val
GAC
[ENA]
¡û
>ENV08001262
ABMV01099729
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
8
82
+
Val
GAC
[ENA]
¡û
>ENV08001263
ABMV01100728
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
5
87
+
Leu
TAG
[ENA]
¡û
>ENV08001264
ABMV01101492
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
92
20
-
Ala
TGC
[ENA]
¡û
>ENV08001265
ABMV01103021
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
89
14
-
Lys
CTT
[ENA]
¡û
>ENV08001266
ABMV01104484
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
81
6
-
Thr
CGT
[ENA]
¡û
>ENV08001267
ABMV01107907
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
34
-
Asn
GTT
[ENA]
¡û
>ENV08001268
ABMV01115716
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
32
107
+
Val
CAC
[ENA]
¡û
>ENV08001269
ABMV01131172
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
34
107
+
Ala
GGC
[ENA]
¡û
>ENV08001270
ABMV01135385
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
96
22
-
Pro
TGG
[ENA]
¡û
>ENV08001271
ABMV01136788
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
35
107
+
Ala
TGC
[ENA]
¡û
>ENV08001272
ABMV01136843
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
106
30
-
Met
CAT
[ENA]
¡û
>ENV08001273
ABMV01151832
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
88
3
-
Ser
GGA
[ENA]
¡û
>ENV08001274
ABMV01159685
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
97
25
-
Met
CAT
[ENA]
¡û
>ENV08001275
ABMV01161527
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
22
105
+
Leu
CAA
[ENA]
¡û
>ENV08001276
ABMV01161686
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
27
98
+
Gln
CTG
[ENA]
¡û
>ENV08001277
ABMV01166965
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
87
3
-
Leu
GAG
[ENA]
¡û
>ENV08001278
ABMV01188488
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
92
21
-
Thr
CGT
[ENA]
¡û
>ENV08001279
ABMV01191184
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
87
14
-
Ala
TGC
[ENA]
¡û
>ENV08001280
ABMV01197232
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
25
99
+
Pro
GGG
[ENA]
¡û
>ENV08001281
ABMV01210158
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
93
21
-
Lys
TTT
[ENA]
¡û
>ENV08001282
ABMV01226908
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
13
88
+
Met
CAT
[ENA]
¡û
>ENV08001283
ABMV01231973
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
85
10
-
Leu
TAG
[ENA]
¡û
>ENV08001284
ABMV01234193
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
82
9
-
Ala
CGC
[ENA]
¡û
>ENV08001285
ABMV01238404
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
76
1
-
His
GTG
[ENA]
¡û
>ENV08001286
ABMV01240893
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
21
96
+
Pro
GGG
[ENA]
¡û
>ENV08001287
ABMV01242338
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
79
5
-
Thr
TGT
[ENA]
¡û
>ENV08001288
ABMV01250424
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
19
94
+
Ala
TGC
[ENA]
¡û
>ENV08001289
ABMV01253834
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
88
2
-
Tyr
GTA
[ENA]
¡û
>ENV08001290
ABMV01265858
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
16
92
+
Met
CAT
[ENA]
¡û
>ENV08001291
ABMV01271417
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
76
5
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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