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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
viral fraction from Gulf of Mexico
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>ENV08000103
ABLW01006833
viral fraction from Gulf of Mexico
107
32
-
Lys
TTT
[ENA]
¡û
>ENV08000104
ABLW01009072
viral fraction from Gulf of Mexico
117
28
-
Ser
GCT
[ENA]
¡û
>ENV08000105
ABLW01018409
viral fraction from Gulf of Mexico
108
29
-
Undet
???
[ENA]
¡û
>ENV08000106
ABLW01019228
viral fraction from Gulf of Mexico
33
108
+
Glu
TTC
[ENA]
¡û
>ENV08000107
ABLW01025087
viral fraction from Gulf of Mexico
115
41
-
Glu
CTC
[ENA]
¡û
>ENV08000108
ABLW01026854
viral fraction from Gulf of Mexico
108
33
-
Pro
TGG
[ENA]
¡û
>ENV08000109
ABLW01028912
viral fraction from Gulf of Mexico
14
88
+
Glu
CTC
[ENA]
¡û
>ENV08000110
ABLW01031473
viral fraction from Gulf of Mexico
105
30
-
Glu
TTC
[ENA]
¡û
>ENV08000111
ABLW01033135
viral fraction from Gulf of Mexico
9
94
+
Tyr
GTA
[ENA]
¡û
>ENV08000112
ABLW01036326
viral fraction from Gulf of Mexico
103
27
-
Thr
TGT
[ENA]
¡û
>ENV08000113
ABLW01041264
viral fraction from Gulf of Mexico
96
22
-
His
GTG
[ENA]
¡û
>ENV08000114
ABLW01049571
viral fraction from Gulf of Mexico
95
9
-
Tyr
GTA
[ENA]
¡û
>ENV08000115
ABLW01055584
viral fraction from Gulf of Mexico
102
29
-
Leu
TAA
[ENA]
¡û
>ENV08000116
ABLW01058129
viral fraction from Gulf of Mexico
81
5
-
Met
CAT
[ENA]
¡û
>ENV08000117
ABLW01063711
viral fraction from Gulf of Mexico
7
95
+
Leu
TAA
[ENA]
¡û
>ENV08000118
ABLW01064299
viral fraction from Gulf of Mexico
13
89
+
Ala
CGC
[ENA]
¡û
>ENV08000119
ABLW01073597
viral fraction from Gulf of Mexico
103
28
-
Leu
TAA
[ENA]
¡û
>ENV08000120
ABLW01078700
viral fraction from Gulf of Mexico
11
87
+
Asn
GTT
[ENA]
¡û
>ENV08000121
ABLW01083816
viral fraction from Gulf of Mexico
4
90
+
Pseudo
GTA
[ENA]
¡û
>ENV08000122
ABLW01085300
viral fraction from Gulf of Mexico
95
19
-
Met
CAT
[ENA]
¡û
>ENV08000123
ABLW01093001
viral fraction from Gulf of Mexico
8
94
+
Leu
CAA
[ENA]
¡û
>ENV08000124
ABLW01093563
viral fraction from Gulf of Mexico
9
79
+
Lys
TTT
[ENA]
¡û
>ENV08000125
ABLW01098743
viral fraction from Gulf of Mexico
22
95
+
Gln
CTG
[ENA]
¡û
>ENV08000126
ABLW01100940
viral fraction from Gulf of Mexico
92
18
-
Gln
TTG
[ENA]
¡û
>ENV08000127
ABLW01118107
viral fraction from Gulf of Mexico
102
29
-
Gln
CTG
[ENA]
¡û
>ENV08000128
ABLW01120327
viral fraction from Gulf of Mexico
88
14
-
Arg
TCT
[ENA]
¡û
>ENV08000129
ABLW01124409
viral fraction from Gulf of Mexico
14
90
+
Arg
TCT
[ENA]
¡û
>ENV08000130
ABLW01137896
viral fraction from Gulf of Mexico
77
1
-
Met
CAT
[ENA]
¡û
>ENV08000131
ABLW01140856
viral fraction from Gulf of Mexico
85
10
-
Lys
CTT
[ENA]
¡û
>ENV08000132
ABLW01149730
viral fraction from Gulf of Mexico
86
13
-
Ala
TGC
[ENA]
¡û
>ENV08000133
ABLW01167734
viral fraction from Gulf of Mexico
93
17
-
Arg
CCG
[ENA]
¡û
>ENV08000134
ABLW01240388
viral fraction from Gulf of Mexico
76
1
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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