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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100075 (11 seq.)
>WENV180021569
FTER01000983
[FTER] metagenome; soil
2078
2162
+
Leu
TAG
[ENA]
¢þ
>WENV180021707
FTFB01004697
[FTFB] metagenome; soil
3178
3262
+
Leu
TAG
[ENA]
¢þ
>WENV180021712
FTFB01005122
[FTFB] metagenome; soil
6496
6580
+
Leu
TAG
[ENA]
¢þ
>WENV180021770
FTFB01008230
[FTFB] metagenome; soil
5770
5854
+
Leu
TAG
[ENA]
¢þ
>WENV180021851
FTFC01002338
[FTFC] metagenome; soil
2361
2445
+
Leu
TAG
[ENA]
¢þ
>WENV180034414
FTKQ01069082
[FTKQ] metagenome; soil
891
975
+
Leu
TAG
[ENA]
¢þ
>WENV180034416
FTKQ01074708
[FTKQ] metagenome; soil
566
650
+
Leu
TAG
[ENA]
¢þ
>WENV180295450
OBIZ01102593
[OBIZ] soil metagenome; soil
425
341
-
Leu
TAG
[ENA]
¢þ
>WENV180352025
OBLQ010149570
[OBLQ] soil metagenome; soil
87
3
-
Leu
TAG
[ENA]
¢þ
>WENV180693559
OCZS011333534
[OCZS] soil metagenome; soil
66
150
+
Leu
TAG
[ENA]
¢þ
>WENV170005651
AMFO01000021
[AMFO] microbial mat metagenome; iron biomat sample collected via suction sampling at the Lo'ihi Seamount, Hawai'i, in about
5781
5697
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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