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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100124 (53 seq.)
>W1710860237
LMCS01000002
Actinomycetota
Microbacterium sp. Root322 [LMCS]
1356354
1356437
+
Leu
CAG
[ENA]
¡û
>W1710863989
LMFN01000004
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
148125
148208
+
Leu
CAG
[ENA]
¡û
>W1710875117
LMOD01000002
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
534692
534609
-
Leu
CAG
[ENA]
¡û
>W1710947792
LOSO01000024
Actinomycetota
Microbacterium sp. CH1 [LOSO]
146337
146254
-
Leu
CAG
[ENA]
¡û
>W131036166
AKVP01000049
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
53641
53724
+
Leu
CAG
[ENA]
¡û
>W131098943
AOSO01000002
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
837759
837842
+
Leu
CAG
[ENA]
¡û
>W1711074829
LSJW01000270
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
6185
6268
+
Leu
CAG
[ENA]
¡û
>W131226581
AUEM01000001
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
639747
639830
+
Leu
CAG
[ENA]
¡û
>W1711963121
NCTV01000017
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
3351
3434
+
Leu
CAG
[ENA]
¡û
>W141075448
ATAO01000228
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
29559
29476
-
Leu
CAG
[ENA]
¡û
>W141187486
AYME01000002
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
287256
287339
+
Leu
CAG
[ENA]
¡û
>W141289412
JARC01000029
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
55435
55518
+
Leu
CAG
[ENA]
¡û
>W141289473
JARD01000029
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
236747
236830
+
Leu
CAG
[ENA]
¡û
>W141289518
JARE01000082
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
112835
112918
+
Leu
CAG
[ENA]
¡û
>W141289563
JARF01000044
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
70616
70533
-
Leu
CAG
[ENA]
¡û
>WENV183735330
PJUA01012481
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
288
371
+
Leu
CAG
[ENA]
¢þ
>WENV183741743
PJUG01005163
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
1022
939
-
Leu
CAG
[ENA]
¢þ
>C181004065
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
34189
34272
+
Leu
CAG
-
¡û
>C191026853
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
30942
31025
+
Leu
CAG
-
¡û
>C191074589
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
39217
39300
+
Leu
CAG
-
¡û
>C191074832
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
31268
31351
+
Leu
CAG
-
¡û
>W1910183325
BJNQ01000001
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
111944
111861
-
Leu
CAG
[ENA]
¡û
>W1910184015
BJOG01000001
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
292314
292231
-
Leu
CAG
[ENA]
¡û
>W1910211963
FMIR01000006
Actinomycetota
Microbacterium oxydans [FMIR]
139806
139889
+
Leu
CAG
[ENA]
¡û
>W1910636809
LPVV01000004
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
378103
378020
-
Leu
CAG
[ENA]
¡û
>W1911566345
PCOT01000008
Actinomycetota
Microbacterium sp. MYb72 [PCOT]
56232
56315
+
Leu
CAG
[ENA]
¡û
>W1911566455
PCOV01000003
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
202394
202477
+
Leu
CAG
[ENA]
¡û
>W1911566593
PCOY01000002
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
124799
124716
-
Leu
CAG
[ENA]
¡û
>W1911566714
PCPA01000010
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
32942
32859
-
Leu
CAG
[ENA]
¡û
>W1911566825
PCPD01000001
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
216602
216519
-
Leu
CAG
[ENA]
¡û
>W1911567019
PCPG01000008
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
102380
102297
-
Leu
CAG
[ENA]
¡û
>W1911567118
PCPI01000006
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
32919
32836
-
Leu
CAG
[ENA]
¡û
>W1911567159
PCPJ01000005
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
124701
124784
+
Leu
CAG
[ENA]
¡û
>W1911567245
PCPL01000003
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
180395
180312
-
Leu
CAG
[ENA]
¡û
>W1911567532
PCPQ01000009
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
124705
124788
+
Leu
CAG
[ENA]
¡û
>W1911594712
PNFU01000002
Actinomycetota
Microbacterium sp. UMB0228 [PNFU]
101380
101463
+
Leu
CAG
[ENA]
¡û
>W1810364609
PVTJ01000002
Actinomycetota
Glycomyces artemisiae CGMCC 4.7067 [PVTJ]
288656
288573
-
Leu
CAG
[ENA]
¡û
>W1810538477
QDFV01000001
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
76671
76588
-
Leu
CAG
[ENA]
¡û
>W1810724650
QOAY01000062
Actinomycetota
Microbacterium sp. H6 [QOAY]
968
1051
+
Leu
CAG
[ENA]
¡û
>W1511348039
JRKC01000027
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
23928
23845
-
Leu
CAG
[ENA]
¡û
>W1511529016
JYJB01000008
Actinomycetota
Microbacterium hydrocarbonoxydans SA35 [JYJB]
503707
503790
+
Leu
CAG
[ENA]
¡û
>W1511588875
LBCR01000029
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
51813
51898
+
Leu
CAG
[ENA]
¡û
>C161070809
CP014313
Actinomycetota
Microbacterium sp. PAMC 28756 HSR44 [CP014313]
1366646
1366729
+
Leu
CAG
[Ensembl]
¡û
>W1610081072
BDCY01000005
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
484596
484513
-
Leu
CAG
[ENA]
¡û
>W1610590707
LDRQ01000006
Actinomycetota
Microbacterium oxydans [LDRQ]
146779
146696
-
Leu
CAG
[ENA]
¡û
>W1610722583
LMCS01000002
Actinomycetota
Microbacterium sp. Root322 [LMCS]
1356354
1356437
+
Leu
CAG
[ENA]
¡û
>W1610726335
LMFN01000004
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
148125
148208
+
Leu
CAG
[ENA]
¡û
>W1610737463
LMOD01000002
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
534692
534609
-
Leu
CAG
[ENA]
¡û
>W1610803794
LOSO01000024
Actinomycetota
Microbacterium sp. CH1 [LOSO]
146337
146254
-
Leu
CAG
[ENA]
¡û
>W1610914134
LSJW01000270
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
6185
6268
+
Leu
CAG
[ENA]
¡û
>W1710079723
BDCY01000005
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
484596
484513
-
Leu
CAG
[ENA]
¡û
>W1710521240
FNGF01000008
Actinomycetota
Glycomyces sambucus [FNGF]
146576
146493
-
Leu
CAG
[ENA]
¡û
>W1710709987
LDRQ01000006
Actinomycetota
Microbacterium oxydans [LDRQ]
146779
146696
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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