This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100217 (51 seq.)
>A171001293
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
680594
680678
+
Leu
CAA
-
¡û
>A171002727
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1484077
1483992
-
Leu
CAA
-
¡û
>A171003123
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
221431
221346
-
Leu
CAA
-
¡û
>A171003483
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3689822
3689905
+
Leu
CAA
-
¡û
>A171006932
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3266279
3266194
-
Leu
CAA
-
¡û
>A171006985
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1139174
1139090
-
Leu
CAA
-
¡û
>WENV170679535
LFCJ01000014
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
69610
69526
-
Leu
CAA
[ENA]
¢þ
>WENV170679578
LFCJ01000042
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
60074
59989
-
Leu
CAA
[ENA]
¢þ
>WENV170679657
LFCJ01000095
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4132
4047
-
Leu
CAA
[ENA]
¢þ
>WENV170679658
LFCJ01000104
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
41004
41089
+
Leu
CAA
[ENA]
¢þ
>WENV170680532
LFCJ01013778
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
510
595
+
Leu
CAA
[ENA]
¢þ
>WENV170681085
LFFM01000039
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
68593
68508
-
Leu
CAA
[ENA]
¢þ
>WENV170681422
LFFM01000766
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
17578
17663
+
Leu
CAA
[ENA]
¢þ
>WENV170681475
LFFM01001041
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6862
6947
+
Leu
CAA
[ENA]
¢þ
>WENV170682074
LFFM01005756
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
124
39
-
Leu
CAA
[ENA]
¢þ
>WENV170701854
LKMJ01000064
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
55408
55493
+
Leu
CAA
[ENA]
¢þ
>WENV170702427
LKMJ01001887
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9591
9506
-
Leu
CAA
[ENA]
¢þ
>WENV170703379
LKMJ01010430
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
85
170
+
Leu
CAA
[ENA]
¢þ
>WENV170703880
LKMJ01017887
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5619
5703
+
Leu
CAA
[ENA]
¢þ
>W1910229334
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
84216
84132
-
Leu
CAA
[ENA]
¡û
>W1910230240
FOKW01000003
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
295842
295927
+
Leu
CAA
[ENA]
¡û
>W1910230454
FORO01000024
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
42175
42090
-
Leu
CAA
[ENA]
¡û
>W1910340515
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
82077
81993
-
Leu
CAA
[ENA]
¡û
>W1910340538
FTNR01000003
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
150536
150453
-
Leu
CAA
[ENA]
¡û
>W1910657574
MASN01000040
Euryarchaeota
Natrialba sp. SSL1 [MASN]
52910
52995
+
Leu
CAA
[ENA]
¡û
>W1910826095
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
285869
285954
+
Leu
CAA
[ENA]
¡û
>W1911591342
PKKI01000035
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
13873
13958
+
Leu
CAA
[ENA]
¡û
>W1610001062
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
68830
68746
-
Leu
CAA
[ENA]
¡û
>W1610004071
AGFZ01000116
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
1212
1127
-
Leu
CAA
[ENA]
¡û
>W1610004097
AGIM01000007
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
177897
177982
+
Leu
CAA
[ENA]
¡û
>W1610011734
AOHS01000051
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
204161
204245
+
Leu
CAA
[ENA]
¡û
>W1610011968
AOHX01000046
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
146402
146485
+
Leu
CAA
[ENA]
¡û
>W1610012007
AOHY01000054
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
7445
7528
+
Leu
CAA
[ENA]
¡û
>W1610012062
AOIA01000017
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
60166
60083
-
Leu
CAA
[ENA]
¡û
>W1610012146
AOIB01000039
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
281
364
+
Leu
CAA
[ENA]
¡û
>W1610012178
AOIC01000087
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
41977
41892
-
Leu
CAA
[ENA]
¡û
>W1610012414
AOIL01000012
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
51852
51769
-
Leu
CAA
[ENA]
¡û
>W1610012463
AOIM01000012
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
60498
60583
+
Leu
CAA
[ENA]
¡û
>W1610012510
AOIN01000046
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
149445
149529
+
Leu
CAA
[ENA]
¡û
>W1610012547
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
386103
386186
+
Leu
CAA
[ENA]
¡û
>W1610012616
AOIP01000032
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
191210
191293
+
Leu
CAA
[ENA]
¡û
>W1610012626
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
73780
73865
+
Leu
CAA
[ENA]
¡û
>W1610012789
AOIT01000039
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
49162
49077
-
Leu
CAA
[ENA]
¡û
>W1610014435
AOLZ01000056
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
1301
1216
-
Leu
CAA
[ENA]
¡û
>W1610014451
AOMA01000017
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
27284
27369
+
Leu
CAA
[ENA]
¡û
>W1610046846
BBCV01000017
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
47361
47276
-
Leu
CAA
[ENA]
¡û
>W1610682125
LKMK01000001
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
60074
59989
-
Leu
CAA
[ENA]
¡û
>W1610682304
LKMR01000119
Euryarchaeota
Natrialbaceae archaeon PL-Br10_E2g26 [LKMR]
5619
5703
+
Leu
CAA
[ENA]
¡û
>W1610682532
LKNC01000015
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
6862
6947
+
Leu
CAA
[ENA]
¡û
>W1610682556
LKND01000003
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
68593
68508
-
Leu
CAA
[ENA]
¡û
>W1610682592
LKND01000121
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
124
39
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK