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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100236 (19 seq.)
>A171003570
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1694371
1694288
-
Leu
TAA
-
¡û
>A171004010
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
798635
798552
-
Leu
TAA
-
¡û
>A171007328
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1537389
1537306
-
Leu
TAA
-
¡û
>A171007377
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
747686
747603
-
Leu
TAA
-
¡û
>A171007411
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
1893807
1893724
-
Leu
TAA
-
¡û
>WENV180003574
FLNZ01006022
[FLNZ] bioreactor metagenome; Moose rumen
1836
1753
-
Leu
TAA
[ENA]
¢þ
>WENV181230298
OFEK01000590
[OFEK] activated sludge metagenome; Anaerobic digester
25686
25603
-
Leu
TAA
[ENA]
¢þ
>WENV170021470
BBPF01013285
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
515
598
+
Leu
TAA
[ENA]
¢þ
>WENV170670096
LAHS01036886
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
458
375
-
Leu
TAA
[ENA]
¢þ
>WENV170677306
LDZT01004899
[LDZT] terrestrial metagenome; oil reservoir sample SB1
11614
11531
-
Leu
TAA
[ENA]
¢þ
>WENV170972045
MTKX01018641
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
351
268
-
Leu
TAA
[ENA]
¢þ
>WENV170976643
MTKZ01010217
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
29261
29344
+
Leu
TAA
[ENA]
¢þ
>W1610006223
AMGN01000005
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
47534
47617
+
Leu
TAA
[ENA]
¡û
>W1610011018
AMPO01000005
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
149535
149618
+
Leu
TAA
[ENA]
¡û
>W1610040626
BAGX02000020
Euryarchaeota
Methanobrevibacter boviskoreani JH1 [BAGX]
371
286
-
Leu
TAA
[ENA]
¡û
>W1610049163
BBES01000013
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
20050
20133
+
Leu
TAA
[ENA]
¡û
>W1610613860
LGGL01000006
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
11614
11531
-
Leu
TAA
[ENA]
¡û
>W1610990678
LWMT01000227
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
11532
11617
+
Leu
TAA
[ENA]
¡û
>W1610990771
LWMW01000117
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
36609
36526
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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