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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100262 (114 seq.)
>W131143648
AQFD01000020
Gammaproteobacteria
Escherichia coli Envira 10/1 [AQFD]
94590
94505
-
Leu
CAG
[ENA]
¡û
>W1711336768
MBRU01000019
Gammaproteobacteria
Cronobacter sakazakii [MBRU]
23308
23223
-
Leu
CAG
[ENA]
¡û
>W1711336769
MBRU01000019
Gammaproteobacteria
Cronobacter sakazakii [MBRU]
23190
23105
-
Leu
CAG
[ENA]
¡û
>W1711336770
MBRU01000019
Gammaproteobacteria
Cronobacter sakazakii [MBRU]
23074
22989
-
Leu
CAG
[ENA]
¡û
>W1711336793
MBRU01000045
Gammaproteobacteria
Cronobacter sakazakii [MBRU]
29748
29833
+
Leu
CAG
[ENA]
¡û
>W1711345896
MCOD01000003
Gammaproteobacteria
Cronobacter sakazakii [MCOD]
33228
33313
+
Leu
CAG
[ENA]
¡û
>W1711345939
MCOD01000026
Gammaproteobacteria
Cronobacter sakazakii [MCOD]
1972
1887
-
Leu
CAG
[ENA]
¡û
>W1711345940
MCOD01000026
Gammaproteobacteria
Cronobacter sakazakii [MCOD]
1854
1769
-
Leu
CAG
[ENA]
¡û
>W1711345941
MCOD01000026
Gammaproteobacteria
Cronobacter sakazakii [MCOD]
1738
1653
-
Leu
CAG
[ENA]
¡û
>W1711962690
NCTO01000013
Gammaproteobacteria
Cronobacter sakazakii [NCTO]
35247
35332
+
Leu
CAG
[ENA]
¡û
>W1711962692
NCTO01000014
Gammaproteobacteria
Cronobacter sakazakii [NCTO]
67249
67334
+
Leu
CAG
[ENA]
¡û
>W1711962693
NCTO01000014
Gammaproteobacteria
Cronobacter sakazakii [NCTO]
67367
67452
+
Leu
CAG
[ENA]
¡û
>W1711962694
NCTO01000014
Gammaproteobacteria
Cronobacter sakazakii [NCTO]
67483
67568
+
Leu
CAG
[ENA]
¡û
>W1712083642
NHQM01000012
Gammaproteobacteria
Cronobacter sakazakii [NHQM]
66810
66725
-
Leu
CAG
[ENA]
¡û
>W1712083643
NHQM01000012
Gammaproteobacteria
Cronobacter sakazakii [NHQM]
66692
66607
-
Leu
CAG
[ENA]
¡û
>W1712083644
NHQM01000012
Gammaproteobacteria
Cronobacter sakazakii [NHQM]
66576
66491
-
Leu
CAG
[ENA]
¡û
>W1712083674
NHQM01000017
Gammaproteobacteria
Cronobacter sakazakii [NHQM]
33309
33394
+
Leu
CAG
[ENA]
¡û
>WENV170001893
AGFT01030820
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
386
301
-
Leu
CAG
[ENA]
¢þ
>C181076007
CP023134
Gammaproteobacteria
Klebsiella pneumoniae subsp. pneumoniae KpvK54 [CP023134]
38996
38911
-
Leu
CAG
-
¡û
>C181142987
CP026845
Gammaproteobacteria
Shigella boydii NCTC 9733 [CP026845]
2193748
2193833
+
Leu
CAG
-
¡û
>C181199838
CP031368
Gammaproteobacteria
Klebsiella pneumoniae KpvST101_OXA-48 [CP031368]
2615478
2615563
+
Leu
CAG
-
¡û
>C191062706
CP028974
Gammaproteobacteria
Cronobacter sakazakii GZcsf-1 [CP028974]
3799671
3799756
+
Leu
CAG
-
¡û
>C191062707
CP028974
Gammaproteobacteria
Cronobacter sakazakii GZcsf-1 [CP028974]
3799789
3799874
+
Leu
CAG
-
¡û
>C191062708
CP028974
Gammaproteobacteria
Cronobacter sakazakii GZcsf-1 [CP028974]
3799905
3799990
+
Leu
CAG
-
¡û
>C191062714
CP028974
Gammaproteobacteria
Cronobacter sakazakii GZcsf-1 [CP028974]
4184320
4184235
-
Leu
CAG
-
¡û
>C191091012
CP032513
Gammaproteobacteria
Shigella flexneri SFL1520 [CP032513]
4541349
4541264
-
Leu
CAG
-
¡û
>C191149898
CP036310
Gammaproteobacteria
Enterobacter hormaechei WCHEH090011 [CP036310]
187703
187788
+
Leu
CAG
-
¡û
>C191197830
LR134156
Gammaproteobacteria
Salmonella enterica subsp. arizonae NCTC10047 [LR134156]
4165200
4165285
+
Leu
CAG
-
¡û
>C191198343
LR134162
Gammaproteobacteria
Klebsiella pneumoniae NCTC13635 [LR134162]
3379690
3379605
-
Leu
CAG
-
¡û
>C191201258
LR134227
Gammaproteobacteria
Escherichia coli NCTC9102 [LR134227]
4474178
4474093
-
Leu
CAG
-
¡û
>C191220614
LR588409
Gammaproteobacteria
Klebsiella variicola NCTC9178 [LR588409]
2225608
2225523
-
Leu
CAG
-
¡û
>W1910931562
NITG01000009
Gammaproteobacteria
Cronobacter sakazakii MOD1_KW4 [NITG]
267024
267109
+
Leu
CAG
[ENA]
¡û
>W1910931563
NITG01000009
Gammaproteobacteria
Cronobacter sakazakii MOD1_KW4 [NITG]
267142
267227
+
Leu
CAG
[ENA]
¡û
>W1910931564
NITG01000009
Gammaproteobacteria
Cronobacter sakazakii MOD1_KW4 [NITG]
267258
267343
+
Leu
CAG
[ENA]
¡û
>W1910931577
NITG01000016
Gammaproteobacteria
Cronobacter sakazakii MOD1_KW4 [NITG]
55422
55337
-
Leu
CAG
[ENA]
¡û
>W1911019115
NLNO01000020
Gammaproteobacteria
Escherichia coli MOD1-EC5502 [NLNO]
35438
35522
+
Leu
CAG
[ENA]
¡û
>W1911021887
NLPI01000011
Gammaproteobacteria
Escherichia coli MOD1-EC5445 [NLPI]
76157
76072
-
Leu
CAG
[ENA]
¡û
>W1911021888
NLPI01000011
Gammaproteobacteria
Escherichia coli MOD1-EC5445 [NLPI]
76038
75953
-
Leu
CAG
[ENA]
¡û
>W1911022550
NLPW01000018
Gammaproteobacteria
Escherichia coli MOD1-EC5273 [NLPW]
79019
78934
-
Leu
CAG
[ENA]
¡û
>W1911206073
NRJL01000010
Gammaproteobacteria
Cronobacter turicensis cro863W1 [NRJL]
15571
15656
+
Leu
CAG
[ENA]
¡û
>W1911206079
NRJL01000011
Gammaproteobacteria
Cronobacter turicensis cro863W1 [NRJL]
35484
35569
+
Leu
CAG
[ENA]
¡û
>W1911206089
NRJL01000016
Gammaproteobacteria
Cronobacter turicensis cro863W1 [NRJL]
158
73
-
Leu
CAG
[ENA]
¡û
>W1911206549
NRJR01000003
Gammaproteobacteria
Cronobacter sakazakii cro14 [NRJR]
287122
287037
-
Leu
CAG
[ENA]
¡û
>W1911206550
NRJR01000003
Gammaproteobacteria
Cronobacter sakazakii cro14 [NRJR]
287004
286919
-
Leu
CAG
[ENA]
¡û
>W1911206551
NRJR01000003
Gammaproteobacteria
Cronobacter sakazakii cro14 [NRJR]
286888
286803
-
Leu
CAG
[ENA]
¡û
>W1911206572
NRJR01000010
Gammaproteobacteria
Cronobacter sakazakii cro14 [NRJR]
55785
55700
-
Leu
CAG
[ENA]
¡û
>W1911207218
NRKA01000003
Gammaproteobacteria
Cronobacter sakazakii cro1813C3 [NRKA]
163828
163743
-
Leu
CAG
[ENA]
¡û
>W1911207247
NRKA01000014
Gammaproteobacteria
Cronobacter sakazakii cro1813C3 [NRKA]
33560
33645
+
Leu
CAG
[ENA]
¡û
>W1911208903
NRKX01000020
Gammaproteobacteria
Cronobacter sakazakii cro664W [NRKX]
33497
33582
+
Leu
CAG
[ENA]
¡û
>W1911208907
NRKX01000022
Gammaproteobacteria
Cronobacter sakazakii cro664W [NRKX]
51790
51705
-
Leu
CAG
[ENA]
¡û
>W1911208908
NRKX01000022
Gammaproteobacteria
Cronobacter sakazakii cro664W [NRKX]
51672
51587
-
Leu
CAG
[ENA]
¡û
>W1911208909
NRKX01000022
Gammaproteobacteria
Cronobacter sakazakii cro664W [NRKX]
51556
51471
-
Leu
CAG
[ENA]
¡û
>W1911210212
NRLQ01000013
Gammaproteobacteria
Cronobacter sakazakii 470G [NRLQ]
24147
24232
+
Leu
CAG
[ENA]
¡û
>W1911210217
NRLQ01000014
Gammaproteobacteria
Cronobacter sakazakii 470G [NRLQ]
33464
33549
+
Leu
CAG
[ENA]
¡û
>W1911210876
NRMA01000046
Gammaproteobacteria
Cronobacter sakazakii cro1489B1 [NRMA]
405
320
-
Leu
CAG
[ENA]
¡û
>W1911210880
NRMA01000072
Gammaproteobacteria
Cronobacter sakazakii cro1489B1 [NRMA]
22023
22108
+
Leu
CAG
[ENA]
¡û
>W1911210908
NRMA01000223
Gammaproteobacteria
Cronobacter sakazakii cro1489B1 [NRMA]
2938
2853
-
Leu
CAG
[ENA]
¡û
>W1911210909
NRMA01000223
Gammaproteobacteria
Cronobacter sakazakii cro1489B1 [NRMA]
2822
2737
-
Leu
CAG
[ENA]
¡û
>W1911212269
NRMT01000004
Gammaproteobacteria
Cronobacter malonaticus cro645B1 [NRMT]
64627
64712
+
Leu
CAG
[ENA]
¡û
>W1911213647
NRNM01000029
Gammaproteobacteria
Cronobacter malonaticus cro1410A1 [NRNM]
19359
19274
-
Leu
CAG
[ENA]
¡û
>W1911213648
NRNM01000029
Gammaproteobacteria
Cronobacter malonaticus cro1410A1 [NRNM]
19241
19156
-
Leu
CAG
[ENA]
¡û
>W1911213649
NRNM01000029
Gammaproteobacteria
Cronobacter malonaticus cro1410A1 [NRNM]
19125
19040
-
Leu
CAG
[ENA]
¡û
>W1911213657
NRNM01000044
Gammaproteobacteria
Cronobacter malonaticus cro1410A1 [NRNM]
366
281
-
Leu
CAG
[ENA]
¡û
>W1810630375
QIRS01000004
Gammaproteobacteria
Cronobacter sakazakii CS-58 [QIRS]
292535
292450
-
Leu
CAG
[ENA]
¡û
>C151022650
CP007391
Gammaproteobacteria
Escherichia coli ST540 [CP007391]
103462
103377
-
Leu
CAG
[Ensembl]
¡û
>WENV11101965
AGFT01030820
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
386
301
-
Leu
CAG
[ENA]
¡û
>W1510733134
CYCQ01000014
Gammaproteobacteria
Escherichia coli 702890_aEPEC [CYCQ]
75861
75776
-
Leu
CAG
[ENA]
¡û
>W1511356816
JRUR01000005
Gammaproteobacteria
Enterobacter sp. E20 [JRUR]
233258
233343
+
Leu
CAG
[ENA]
¡û
>W121091433
AKMX01000009
Gammaproteobacteria
Shigella flexneri K-1770 [AKMX]
237619
237534
-
Leu
CAG
[ENA]
¡û
>W1610443798
FJZQ01000003
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZQ]
253401
253316
-
Leu
CAG
[ENA]
¡û
>W1610448692
FKCI01000003
Gammaproteobacteria
Enterobacter hormaechei aerogenes [FKCI]
240607
240522
-
Leu
CAG
[ENA]
¡û
>W1610451816
FKEA01000009
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEA]
42365
42280
-
Leu
CAG
[ENA]
¡û
>W1610456527
FKGP01000004
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGP]
260349
260264
-
Leu
CAG
[ENA]
¡û
>W1610460014
FKIU01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKIU]
39665
39580
-
Leu
CAG
[ENA]
¡û
>W1610515541
FMBC01000001
Gammaproteobacteria
Kosakonia oryziphila oryziphilus [FMBC]
52200
52115
-
Leu
CAG
[ENA]
¡û
>W1610523923
JOLW01000002
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
266458
266543
+
Leu
CAG
[ENA]
¡û
>W1610523924
JOLW01000002
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
266576
266661
+
Leu
CAG
[ENA]
¡û
>W1610523925
JOLW01000002
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
266692
266777
+
Leu
CAG
[ENA]
¡û
>W1610523968
JOLW01000028
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
33561
33646
+
Leu
CAG
[ENA]
¡û
>W1610524080
JOLY01000006
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
26384
26469
+
Leu
CAG
[ENA]
¡û
>W1610524081
JOLY01000006
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
26502
26587
+
Leu
CAG
[ENA]
¡û
>W1610524082
JOLY01000006
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
26618
26703
+
Leu
CAG
[ENA]
¡û
>W1610524119
JOLY01000022
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
55608
55523
-
Leu
CAG
[ENA]
¡û
>W1610524186
JOLZ01000012
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
54695
54610
-
Leu
CAG
[ENA]
¡û
>W1610524187
JOLZ01000012
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
54577
54492
-
Leu
CAG
[ENA]
¡û
>W1610524188
JOLZ01000012
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
54461
54376
-
Leu
CAG
[ENA]
¡û
>W1610524200
JOLZ01000032
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
33553
33638
+
Leu
CAG
[ENA]
¡û
>W1630008003
FKEH01000004
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEH]
50784
50699
-
Leu
CAG
[ENA]
¡û
>W1730007267
FKEH01000004
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEH]
50784
50699
-
Leu
CAG
[ENA]
¡û
>W1710443426
FJZQ01000003
Gammaproteobacteria
Enterobacter hormaechei cloacae [FJZQ]
253401
253316
-
Leu
CAG
[ENA]
¡û
>W1710448320
FKCI01000003
Gammaproteobacteria
Enterobacter hormaechei aerogenes [FKCI]
240607
240522
-
Leu
CAG
[ENA]
¡û
>W1710451444
FKEA01000009
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKEA]
42365
42280
-
Leu
CAG
[ENA]
¡û
>W1710456155
FKGP01000004
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGP]
260349
260264
-
Leu
CAG
[ENA]
¡û
>W1710459642
FKIU01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKIU]
39665
39580
-
Leu
CAG
[ENA]
¡û
>W1710501231
FMBC01000001
Gammaproteobacteria
Kosakonia oryziphila oryziphilus [FMBC]
52200
52115
-
Leu
CAG
[ENA]
¡û
>W1710621024
JNCY01000053
Gammaproteobacteria
Cronobacter sakazakii [JNCY]
268373
268458
+
Leu
CAG
[ENA]
¡û
>W1710621025
JNCY01000053
Gammaproteobacteria
Cronobacter sakazakii [JNCY]
268491
268576
+
Leu
CAG
[ENA]
¡û
>W1710621086
JNCZ01000045
Gammaproteobacteria
Cronobacter sakazakii [JNCZ]
33528
33613
+
Leu
CAG
[ENA]
¡û
>W1710621098
JNCZ01000121
Gammaproteobacteria
Cronobacter sakazakii [JNCZ]
191488
191573
+
Leu
CAG
[ENA]
¡û
>W1710621099
JNCZ01000121
Gammaproteobacteria
Cronobacter sakazakii [JNCZ]
191606
191691
+
Leu
CAG
[ENA]
¡û
>W1710621189
JNDB01000168
Gammaproteobacteria
Cronobacter sakazakii [JNDB]
51545
51460
-
Leu
CAG
[ENA]
¡û
>W1710621190
JNDB01000168
Gammaproteobacteria
Cronobacter sakazakii [JNDB]
51427
51342
-
Leu
CAG
[ENA]
¡û
>W1710623943
JOLW01000002
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
266458
266543
+
Leu
CAG
[ENA]
¡û
>W1710623944
JOLW01000002
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
266576
266661
+
Leu
CAG
[ENA]
¡û
>W1710623945
JOLW01000002
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
266692
266777
+
Leu
CAG
[ENA]
¡û
>W1710623988
JOLW01000028
Gammaproteobacteria
Cronobacter sakazakii [JOLW]
33561
33646
+
Leu
CAG
[ENA]
¡û
>W1710624100
JOLY01000006
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
26384
26469
+
Leu
CAG
[ENA]
¡û
>W1710624101
JOLY01000006
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
26502
26587
+
Leu
CAG
[ENA]
¡û
>W1710624102
JOLY01000006
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
26618
26703
+
Leu
CAG
[ENA]
¡û
>W1710624139
JOLY01000022
Gammaproteobacteria
Cronobacter sakazakii [JOLY]
55608
55523
-
Leu
CAG
[ENA]
¡û
>W1710624206
JOLZ01000012
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
54695
54610
-
Leu
CAG
[ENA]
¡û
>W1710624207
JOLZ01000012
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
54577
54492
-
Leu
CAG
[ENA]
¡û
>W1710624208
JOLZ01000012
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
54461
54376
-
Leu
CAG
[ENA]
¡û
>W1710624220
JOLZ01000032
Gammaproteobacteria
Cronobacter sakazakii [JOLZ]
33553
33638
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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