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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100353 (124 seq.)
>W1710864877
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
530784
530869
+
Tyr
GTA
[ENA]
¡û
>W1710865018
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
298671
298586
-
Tyr
GTA
[ENA]
¡û
>W1710867428
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
298637
298552
-
Tyr
GTA
[ENA]
¡û
>W1710912500
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
324238
324323
+
Tyr
GTA
[ENA]
¡û
>W1710912548
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
426496
426411
-
Tyr
GTA
[ENA]
¡û
>W1710912594
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
426496
426411
-
Tyr
GTA
[ENA]
¡û
>W1710912637
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
324322
324407
+
Tyr
GTA
[ENA]
¡û
>W1710912680
LNRV01000003
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
22049
22134
+
Tyr
GTA
[ENA]
¡û
>W1710912727
LNRW01000001
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
317730
317815
+
Tyr
GTA
[ENA]
¡û
>W1710912772
LNRX01000001
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
324235
324320
+
Tyr
GTA
[ENA]
¡û
>W1710912847
LNRY01000018
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
79931
79846
-
Tyr
GTA
[ENA]
¡û
>W1710912897
LNRZ01000009
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
143250
143165
-
Tyr
GTA
[ENA]
¡û
>W1710912919
LNSA01000003
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
65248
65163
-
Tyr
GTA
[ENA]
¡û
>W1710912956
LNSB01000007
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
104523
104438
-
Tyr
GTA
[ENA]
¡û
>W1710913000
LNSC01000006
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
104525
104440
-
Tyr
GTA
[ENA]
¡û
>W1710913049
LNSD01000003
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
493171
493086
-
Tyr
GTA
[ENA]
¡û
>W1710913111
LNSE01000008
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
195848
195763
-
Tyr
GTA
[ENA]
¡û
>W1710913147
LNSF01000004
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
493171
493086
-
Tyr
GTA
[ENA]
¡û
>W1710913192
LNSG01000004
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
493172
493087
-
Tyr
GTA
[ENA]
¡û
>W1710913238
LNSH01000007
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
195855
195770
-
Tyr
GTA
[ENA]
¡û
>W1710913305
LNSI01000021
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
54863
54778
-
Tyr
GTA
[ENA]
¡û
>W1710913340
LNSJ01000018
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
86303
86218
-
Tyr
GTA
[ENA]
¡û
>W1711082181
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
27786
27871
+
Tyr
GTA
[ENA]
¡û
>W1711083827
LSVG01000001
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
3307
3222
-
Tyr
GTA
[ENA]
¡û
>W1711146774
LVJD01000214
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
1279
1194
-
Tyr
GTA
[ENA]
¡û
>W1711259773
LYVN01000022
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
39896
39811
-
Tyr
GTA
[ENA]
¡û
>W1712105776
NISJ01000006
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
228279
228364
+
Tyr
GTA
[ENA]
¡û
>W1712105829
NISK01000003
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
731222
731307
+
Tyr
GTA
[ENA]
¡û
>C171094548
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
363318
363403
+
Tyr
GTA
-
¡û
>C171128408
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
1251739
1251824
+
Tyr
GTA
-
¡û
>W131002996
AGZU01000008
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
1277678
1277763
+
Tyr
GTA
[ENA]
¡û
>W131052358
AMYX01000004
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
124835
124920
+
Tyr
GTA
[ENA]
¡û
>W131215051
ATUR01000004
Alphaproteobacteria
Novosphingopyxis baekryungensis DSM 16222 [ATUR]
174847
174932
+
Tyr
GTA
[ENA]
¡û
>C019722
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
854471
854556
+
Tyr
GTA
[Ensembl]
¡û
>WENV180040737
LLBZ010009862
[LLBZ] soil metagenome; soil from tomato rhizosphere
14617
14532
-
Tyr
GTA
[ENA]
¢þ
>WENV180101307
OAOU01022570
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
30
115
+
Tyr
GTA
[ENA]
¢þ
>WENV180391066
OBPM01005781
[OBPM] marine metagenome; ENVO:00002010
191
106
-
Tyr
GTA
[ENA]
¢þ
>WENV180594016
OCOY01010804
[OCOY] marine metagenome; ENVO:00002010
832
917
+
Tyr
GTA
[ENA]
¢þ
>WENV181166935
OEIU01004418
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
96
181
+
Tyr
GTA
[ENA]
¢þ
>WENV181226693
OFDN01000008
[OFDN] hot springs metagenome; Water
179149
179234
+
Tyr
GTA
[ENA]
¢þ
>WENV181368322
OFQL01000682
[OFQL] freshwater metagenome; Freshwater Lake
2049
2134
+
Tyr
GTA
[ENA]
¢þ
>WENV181370412
OFQS01009318
[OFQS] freshwater metagenome; Freshwater Lake
557
472
-
Tyr
GTA
[ENA]
¢þ
>W141231055
BATN01000131
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
5704
5619
-
Tyr
GTA
[ENA]
¡û
>ENV08000205
ABLY01016752
viral fraction from Arctic Ocean
92
7
-
Tyr
GTA
[ENA]
¡û
>ENV08000215
ABLY01028919
viral fraction from Arctic Ocean
30
113
+
Tyr
GTA
[ENA]
¡û
>ENV08000226
ABLY01050397
viral fraction from Arctic Ocean
114
29
-
Tyr
GTA
[ENA]
¡û
>WENV183732767
PJTX01011876
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
922
837
-
Tyr
GTA
[ENA]
¢þ
>WENV183732955
PJTY01000007
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
95726
95811
+
Tyr
GTA
[ENA]
¢þ
>WENV183734227
PJTZ01000298
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
7796
7711
-
Tyr
GTA
[ENA]
¢þ
>WENV183736814
PJUD01000039
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
141569
141484
-
Tyr
GTA
[ENA]
¢þ
>WENV183739616
PJUE01042489
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
357
272
-
Tyr
GTA
[ENA]
¢þ
>WENV170308265
CESL01013525
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1790
1705
-
Tyr
GTA
[ENA]
¢þ
>WENV170374526
CETT01096613
[CETT] marine metagenome genome assembly TARA_110_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16
101
+
Tyr
GTA
[ENA]
¢þ
>WENV170596829
FUIF01014908
[FUIF] marine metagenome; marine
686
771
+
Tyr
GTA
[ENA]
¢þ
>WENV170655590
JTFN01048948
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
140
225
+
Tyr
GTA
[ENA]
¢þ
>WENV170708418
LNAP01079707
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
679
594
-
Tyr
GTA
[ENA]
¢þ
>WENV170711799
LNFM01007486
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10413
10328
-
Tyr
GTA
[ENA]
¢þ
>WENV170712517
LNFM01014234
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9873
9788
-
Tyr
GTA
[ENA]
¢þ
>WENV170974059
MTKY01053424
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
15871
15786
-
Tyr
GTA
[ENA]
¢þ
>WENV170994086
MWWD01010562
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
820
735
-
Tyr
GTA
[ENA]
¢þ
>WENV170994087
MWWD01010562
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
102
17
-
Tyr
GTA
[ENA]
¢þ
>W09102979
AAIP01000022
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
2745
2660
-
Tyr
GTA
[ENA]
¡û
>C181047595
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
5196735
5196650
-
Tyr
GTA
-
¡û
>C181089687
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
5498078
5498163
+
Tyr
GTA
-
¡û
>C191000342
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1035203
1035288
+
Tyr
GTA
-
¡û
>C191000559
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
766252
766337
+
Tyr
GTA
-
¡û
>W141520428
JGVR01000001
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
143433
143518
+
Tyr
GTA
[ENA]
¡û
>C191063637
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
4535200
4535285
+
Tyr
GTA
-
¡û
>C191103892
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
4560570
4560655
+
Tyr
GTA
-
¡û
>C191163675
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
1547303
1547388
+
Tyr
GTA
-
¡û
>C191163792
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1783305
1783390
+
Tyr
GTA
-
¡û
>W141807728
JPOU01000002
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
169466
169381
-
Tyr
GTA
[ENA]
¡û
>W1910744333
MIAL01000011
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
41506
41421
-
Tyr
GTA
[ENA]
¡û
>W1910744384
MIAM01000017
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
11485
11570
+
Tyr
GTA
[ENA]
¡û
>W1910934243
NIWD01000006
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
95274
95189
-
Tyr
GTA
[ENA]
¡û
>W1911114848
NOIW01000156
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
5799
5714
-
Tyr
GTA
[ENA]
¡û
>W1911688282
QLJK01000004
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
78147
78062
-
Tyr
GTA
[ENA]
¡û
>SRA1000142
SRR001036.54980
Marine Viruses from Arctic Ocean (SRP000129)
92
7
-
Tyr
GTA
[SRA]
>SRA1000157
SRR001036.155457
Marine Viruses from Arctic Ocean (SRP000129)
114
29
-
Tyr
GTA
[SRA]
>SRA1000158
SRR001036.161401
Marine Viruses from Arctic Ocean (SRP000129)
114
29
-
Tyr
GTA
[SRA]
>SRA1000208
SRR001037.1428
Marine Viruses from Arctic Ocean (SRP000129)
30
113
+
Tyr
GTA
[SRA]
>W1911722417
QRAL01000002
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
266677
266592
-
Tyr
GTA
[ENA]
¡û
>W1810107979
PHFW01000003
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
976871
976956
+
Tyr
GTA
[ENA]
¡û
>W1810594348
QFZL01000001
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
198647
198732
+
Tyr
GTA
[ENA]
¡û
>W1810789402
QRGP01000001
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
1686936
1686851
-
Tyr
GTA
[ENA]
¡û
>C151044399
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2530193
2530108
-
Tyr
GTA
[Ensembl]
¡û
>C151051497
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1635571
1635656
+
Tyr
GTA
-
¡û
>W1510015776
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
1460061
1460146
+
Tyr
GTA
[ENA]
¡û
>W1510941309
JFFT01000001
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
357367
357452
+
Tyr
GTA
[ENA]
¡û
>W1511221146
JNFC01000002
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
29487
29572
+
Tyr
GTA
[ENA]
¡û
>W1511221229
JNFD01000047
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
193903
193988
+
Tyr
GTA
[ENA]
¡û
>W1511324674
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
663573
663488
-
Tyr
GTA
[ENA]
¡û
>W11176461
AFXE01000158
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
85528
85613
+
Tyr
GTA
[ENA]
¡û
>C161021409
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
2926207
2926122
-
Tyr
GTA
[Ensembl]
¡û
>C161043644
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1048847
1048932
+
Tyr
GTA
[Ensembl]
¡û
>C161055673
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
3120183
3120098
-
Tyr
GTA
-
¡û
>WENV058427
AACY023329197
Marine microbial communities from Global Ocean Sampling (GOS)
239
326
+
Tyr
GTA
[ENA]
>W1610727223
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
530784
530869
+
Tyr
GTA
[ENA]
¡û
>W1610727364
LMGI01000002
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
298671
298586
-
Tyr
GTA
[ENA]
¡û
>W1610729774
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
298637
298552
-
Tyr
GTA
[ENA]
¡û
>W1610770859
LNRR01000001
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
324238
324323
+
Tyr
GTA
[ENA]
¡û
>W1610770907
LNRS01000001
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
426496
426411
-
Tyr
GTA
[ENA]
¡û
>W1610770953
LNRT01000001
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
426496
426411
-
Tyr
GTA
[ENA]
¡û
>W1610770996
LNRU01000001
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
324322
324407
+
Tyr
GTA
[ENA]
¡û
>W1610771039
LNRV01000003
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
22049
22134
+
Tyr
GTA
[ENA]
¡û
>W1610771086
LNRW01000001
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
317730
317815
+
Tyr
GTA
[ENA]
¡û
>W1610771131
LNRX01000001
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
324235
324320
+
Tyr
GTA
[ENA]
¡û
>W1610771206
LNRY01000018
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
79931
79846
-
Tyr
GTA
[ENA]
¡û
>W1610771256
LNRZ01000009
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
143250
143165
-
Tyr
GTA
[ENA]
¡û
>W1610771278
LNSA01000003
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
65248
65163
-
Tyr
GTA
[ENA]
¡û
>W1610771315
LNSB01000007
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
104523
104438
-
Tyr
GTA
[ENA]
¡û
>W1610771359
LNSC01000006
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
104525
104440
-
Tyr
GTA
[ENA]
¡û
>W1610771408
LNSD01000003
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
493171
493086
-
Tyr
GTA
[ENA]
¡û
>W1610771470
LNSE01000008
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
195848
195763
-
Tyr
GTA
[ENA]
¡û
>W1610771506
LNSF01000004
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
493171
493086
-
Tyr
GTA
[ENA]
¡û
>W1610771551
LNSG01000004
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
493172
493087
-
Tyr
GTA
[ENA]
¡û
>W1610771597
LNSH01000007
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
195855
195770
-
Tyr
GTA
[ENA]
¡û
>W1610771664
LNSI01000021
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
54863
54778
-
Tyr
GTA
[ENA]
¡û
>W1610771699
LNSJ01000018
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
86303
86218
-
Tyr
GTA
[ENA]
¡û
>W1610920966
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
27786
27871
+
Tyr
GTA
[ENA]
¡û
>W1610922580
LSVG01000001
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
3307
3222
-
Tyr
GTA
[ENA]
¡û
>W1710540050
FNWK01000002
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
713573
713488
-
Tyr
GTA
[ENA]
¡û
>W1710592145
FRCG01000002
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
445617
445702
+
Tyr
GTA
[ENA]
¡û
>W1710602870
FUYP01000001
Alphaproteobacteria
Sphingopyxis flava [FUYP]
380
295
-
Tyr
GTA
[ENA]
¡û
Select
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(Sample source for ENV)
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Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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