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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100474 (76 seq.)
>W1710782885
LJFJ01000005
Bacillota
Limosilactobacillus fermentum [LJFJ]
559771
559855
+
Leu
TAG
[ENA]
¡û
>W1710801575
LJWZ01000021
Bacillota
Limosilactobacillus fermentum [LJWZ]
44889
44973
+
Leu
TAG
[ENA]
¡û
>W1711185546
LWNM01000090
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
31025
31109
+
Leu
TAG
[ENA]
¡û
>W1711487631
MKGE01000044
Bacillota
Limosilactobacillus fermentum [MKGE]
8614
8530
-
Leu
TAG
[ENA]
¡û
>W1711658984
MQRF01000019
Bacillota
Enterococcus faecium [MQRF]
304
388
+
Leu
TAG
[ENA]
¡û
>W1712106892
NIWV01000003
Bacillota
Limosilactobacillus fermentum [NIWV]
43190
43106
-
Leu
TAG
[ENA]
¡û
>C171057922
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
555178
555094
-
Leu
TAG
-
¡û
>C171088268
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
1389098
1389182
+
Leu
TAG
-
¡û
>C171115648
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
1867131
1867047
-
Leu
TAG
-
¡û
>C171123299
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
1022119
1022035
-
Leu
TAG
-
¡û
>WENV180334120
OBLF01005185
[OBLF] metagenome; feces
6209
6293
+
Leu
TAG
[ENA]
¢þ
>WENV180410609
OBUX01000516
[OBUX] human gut metagenome; faeces
264
180
-
Leu
TAG
[ENA]
¢þ
>W141092500
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
1734832
1734748
-
Leu
TAG
[ENA]
¡û
>W141094659
AVCT01000233
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
386
302
-
Leu
TAG
[ENA]
¡û
>W141148221
AWXS01000200
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
5940
5856
-
Leu
TAG
[ENA]
¡û
>WENV181506137
OGGM01000152
[OGGM] metagenome; Human gut stool
43398
43482
+
Leu
TAG
[ENA]
¢þ
>W141180746
AYHA01000105
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
191
107
-
Leu
TAG
[ENA]
¡û
>C08006070
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
1734135
1734051
-
Leu
TAG
[Ensembl]
¡û
>WENV183182542
OLPK01000463
[OLPK] human gut metagenome; faeces
4023
3939
-
Leu
TAG
[ENA]
¢þ
>WENV183217704
OLQI01001368
[OLQI] human gut metagenome; faeces
8329
8245
-
Leu
TAG
[ENA]
¢þ
>PL191001216
CP033372
Firmicutes
Lactobacillus fermentum DR9 plasmid:unnamed1 (CP033372)
113556
113640
+
Leu
TAG
[ENA]
¡û
>C181004043
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
1634343
1634259
-
Leu
TAG
-
¡û
>C181054774
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
1634297
1634213
-
Leu
TAG
-
¡û
>C181196727
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
1156878
1156794
-
Leu
TAG
-
¡û
>C181226947
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
1715735
1715651
-
Leu
TAG
-
¡û
>C191012449
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
1590867
1590951
+
Leu
TAG
-
¡û
>C191119220
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
1194643
1194727
+
Leu
TAG
-
¡û
>C191121373
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
1580798
1580714
-
Leu
TAG
-
¡û
>C191134187
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
401820
401904
+
Leu
TAG
-
¡û
>C191134247
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
1796038
1796122
+
Leu
TAG
-
¡û
>W09122656
ACGI01000114
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
8934
9018
+
Leu
TAG
[ENA]
¡û
>W141805333
JPKN01000031
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
23173
23257
+
Leu
TAG
[ENA]
¡û
>W1910181264
BJLV01000022
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
5940
5856
-
Leu
TAG
[ENA]
¡û
>W1910374048
FUHY01000033
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
7307
7223
-
Leu
TAG
[ENA]
¡û
>W1910374094
FUHZ01000034
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
7307
7223
-
Leu
TAG
[ENA]
¡û
>W1910954289
NJPQ01000005
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
71180
71264
+
Leu
TAG
[ENA]
¡û
>W1911502678
OEPY01000002
Bacillota
[Lactobacillus] timonensis Marseille-P3825 [OEPY]
669563
669645
+
Leu
TAG
[ENA]
¡û
>W1911533683
OKQY01000001
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
61941
61857
-
Leu
TAG
[ENA]
¡û
>W1810058977
PDKX01000043
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
4460
4376
-
Leu
TAG
[ENA]
¡û
>W1810090572
PGGE01000005
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
43198
43114
-
Leu
TAG
[ENA]
¡û
>W1810090623
PGGI01000005
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
68744
68660
-
Leu
TAG
[ENA]
¡û
>W1810090679
PGGJ01000023
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
4301
4217
-
Leu
TAG
[ENA]
¡û
>W1810190818
PKKD01000008
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
38398
38314
-
Leu
TAG
[ENA]
¡û
>W1810196538
PNBB01000030
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
6518
6602
+
Leu
TAG
[ENA]
¡û
>W1810223751
POTQ01000001
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
67141
67057
-
Leu
TAG
[ENA]
¡û
>W1810297056
PTLW01000041
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
7702
7786
+
Leu
TAG
[ENA]
¡û
>W1810473313
QAHK01000005
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
56190
56274
+
Leu
TAG
[ENA]
¡û
>W1810489146
QAZV01000003
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
119430
119514
+
Leu
TAG
[ENA]
¡û
>W1810695523
QLNN01000078
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
43854
43770
-
Leu
TAG
[ENA]
¡û
>W1810705587
QMJL01000002
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
10862
10946
+
Leu
TAG
[ENA]
¡û
>W1810705642
QMJM01000015
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
4002
3918
-
Leu
TAG
[ENA]
¡û
>W1810811185
QRYA01000002
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
61383
61299
-
Leu
TAG
[ENA]
¡û
>W1810811839
QRYM01000006
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
43777
43693
-
Leu
TAG
[ENA]
¡û
>W1810814637
QSAL01000002
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
44545
44629
+
Leu
TAG
[ENA]
¡û
>C151084267
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
1917913
1917829
-
Leu
TAG
-
¡û
>W10102065
ACOH01000006
Bacillota
Limosilactobacillus coleohominis 101-4-CHN [ACOH]
109896
109980
+
Leu
TAG
[ENA]
¡û
>W10103376
ACQG01000034
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
38485
38569
+
Leu
TAG
[ENA]
¡û
>W1510021769
BCAH01000007
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
61751
61833
+
Leu
TAG
[ENA]
¡û
>W1510022529
CBZV010000005
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
45037
44953
-
Leu
TAG
[ENA]
¡û
>C10108370
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
1735369
1735285
-
Leu
TAG
[Ensembl]
¡û
>W11102221
ACOH01000006
Bacillota
Limosilactobacillus coleohominis 101-4-CHN [ACOH]
109896
109980
+
Leu
TAG
[ENA]
¡û
>W11103532
ACQG01000034
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
38485
38569
+
Leu
TAG
[ENA]
¡û
>W1511443768
JUTH01000130
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
98
182
+
Leu
TAG
[ENA]
¡û
>W1511567812
LAIK01000002
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
152717
152633
-
Leu
TAG
[ENA]
¡û
>W1511589452
LBDG01000001
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
69552
69468
-
Leu
TAG
[ENA]
¡û
>W1511589499
LBDH01000001
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
29219
29303
+
Leu
TAG
[ENA]
¡û
>C161077687
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
2247506
2247590
+
Leu
TAG
-
¡û
>W1610035924
AZEW01000787
Bacillota
Limosilactobacillus coleohominis DSM 14060 [AZEW]
337
421
+
Leu
TAG
[ENA]
¡û
>W1610083157
CBUR010000009
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
4061
3977
-
Leu
TAG
[ENA]
¡û
>C131016190
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
1697264
1697180
-
Leu
TAG
[Ensembl]
¡û
>W1610527925
JQAU01000040
Bacillota
Limosilactobacillus fermentum [JQAU]
8250
8334
+
Leu
TAG
[ENA]
¡û
>W1610647393
LJFJ01000005
Bacillota
Limosilactobacillus fermentum [LJFJ]
559771
559855
+
Leu
TAG
[ENA]
¡û
>W1610665532
LJWZ01000021
Bacillota
Limosilactobacillus fermentum [LJWZ]
44889
44973
+
Leu
TAG
[ENA]
¡û
>W1710032963
AZEW01000787
Bacillota
Limosilactobacillus coleohominis DSM 14060 [AZEW]
337
421
+
Leu
TAG
[ENA]
¡û
>W1710088277
CBUR010000009
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
4061
3977
-
Leu
TAG
[ENA]
¡û
>W1710629556
JQAU01000040
Bacillota
Limosilactobacillus fermentum [JQAU]
8250
8334
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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