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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100504 (59 seq.)
>W1710802238
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
3200
3283
+
Tyr
GTA
[ENA]
¡û
>W131053370
AMZY02000010
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
312203
312120
-
Tyr
GTA
[ENA]
¡û
>W131146338
AQHR01000107
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
149928
149843
-
Tyr
GTA
[ENA]
¡û
>W131167771
ARDN01000011
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
130440
130523
+
Tyr
GTA
[ENA]
¡û
>W131179050
ARMB01000059
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
397820
397905
+
Tyr
GTA
[ENA]
¡û
>W131211913
ATNM01000091
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
117218
117133
-
Tyr
GTA
[ENA]
¡û
>W131223084
AUBU01000002
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
57533
57616
+
Tyr
GTA
[ENA]
¡û
>W131223125
AUBV01000003
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
326922
327007
+
Tyr
GTA
[ENA]
¡û
>W131223162
AUBW01000004
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
93092
93009
-
Tyr
GTA
[ENA]
¡û
>W131223225
AUBX01000016
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
305272
305355
+
Tyr
GTA
[ENA]
¡û
>W1711704540
MSPQ01000001
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
911718
911801
+
Tyr
GTA
[ENA]
¡û
>W1711707951
MSSX01000004
Bacteroidota
Algoriphagus faecimaris [MSSX]
68726
68641
-
Tyr
GTA
[ENA]
¡û
>W1711751661
MUNY01000033
Bacteroidota
Algoriphagus sp. A40 [MUNY]
6083
6166
+
Tyr
GTA
[ENA]
¡û
>w023321
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
466729
466642
-
Tyr
GTA
[ENA]
¡û
>WENV180298590
OBJA01458509
[OBJA] soil metagenome; sediment, water from around vicinity
283
200
-
Tyr
GTA
[ENA]
¢þ
>W141039114
ALWO02000011
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
193129
193044
-
Tyr
GTA
[ENA]
¡û
>W141043704
AMGM01000003
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
74298
74213
-
Tyr
GTA
[ENA]
¡û
>WENV181233823
OFET01000126
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
60392
60475
+
Tyr
GTA
[ENA]
¢þ
>W141148141
AWXR01000001
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
125292
125377
+
Tyr
GTA
[ENA]
¡û
>W141278913
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
3819529
3819612
+
Tyr
GTA
[ENA]
¡û
>WENV170192610
CEPF01034446
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
490
405
-
Tyr
GTA
[ENA]
¢þ
>WENV170192844
CEPG01019766
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
98
13
-
Tyr
GTA
[ENA]
¢þ
>WENV170193891
CEPI01064000
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
312
227
-
Tyr
GTA
[ENA]
¢þ
>WENV170408923
CEUI01100297
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
226
141
-
Tyr
GTA
[ENA]
¢þ
>WENV170834207
MDSZ01093728
[MDSZ] marine metagenome; seawater
245
160
-
Tyr
GTA
[ENA]
¢þ
>C181187366
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2053875
2053792
-
Tyr
GTA
-
¡û
>C191175213
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
273987
273904
-
Tyr
GTA
-
¡û
>C191189188
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
274949
274866
-
Tyr
GTA
-
¡û
>W141699654
JMIH01000014
Bacteroidota
Anditalea andensis [JMIH]
620099
620014
-
Tyr
GTA
[ENA]
¡û
>W1910548303
FZOK01000008
Bacteroidota
Belliella buryatensis 5C [FZOK]
110899
110816
-
Tyr
GTA
[ENA]
¡û
>W1910932891
NIUC01000002
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
594322
594239
-
Tyr
GTA
[ENA]
¡û
>W1911775200
QXML01000001
Bacteroidota
Algoriphagus lacus N3 [QXML]
868520
868605
+
Tyr
GTA
[ENA]
¡û
>W1810365006
PVTR01000008
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
169161
169078
-
Tyr
GTA
[ENA]
¡û
>W1810400580
PYGF01000003
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
117062
116979
-
Tyr
GTA
[ENA]
¡û
>W1810531991
QCXY01000009
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
66889
66806
-
Tyr
GTA
[ENA]
¡û
>W1810606271
QGOL01000008
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
99828
99745
-
Tyr
GTA
[ENA]
¡û
>W1810682166
QKTX01000006
Bacteroidota
Algoriphagus aquaeductus T4 [QKTX]
120484
120567
+
Tyr
GTA
[ENA]
¡û
>W1810705052
QMIK01000003
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
471392
471475
+
Tyr
GTA
[ENA]
¡û
>C151090011
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
3026881
3026966
+
Tyr
GTA
[Ensembl]
¡û
>C11105718
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
3016045
3016130
+
Tyr
GTA
[Ensembl]
¡û
>C121010182
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
1802600
1802683
+
Tyr
GTA
[Ensembl]
¡û
>C161046167
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
1231029
1231112
+
Tyr
GTA
[Ensembl]
¡û
>W1610050116
BBFN01000020
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
27578
27661
+
Tyr
GTA
[ENA]
¡û
>W121064847
AJMQ01000109
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
66056
65971
-
Tyr
GTA
[ENA]
¡û
>W121071515
AJYA01000002
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
40873
40956
+
Tyr
GTA
[ENA]
¡û
>C131003319
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
276419
276336
-
Tyr
GTA
[Ensembl]
¡û
>W1610666095
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
3200
3283
+
Tyr
GTA
[ENA]
¡û
>W1710046515
BBFN01000020
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
27578
27661
+
Tyr
GTA
[ENA]
¡û
>W1710509407
FMXE01000021
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
47784
47867
+
Tyr
GTA
[ENA]
¡û
>W1710513379
FNAC01000005
Bacteroidota
Algoriphagus faecimaris [FNAC]
80951
81036
+
Tyr
GTA
[ENA]
¡û
>W1710532183
FNQC01000002
Bacteroidota
Rhodonellum ikkaensis [FNQC]
487646
487731
+
Tyr
GTA
[ENA]
¡û
>W1710539765
FNVR01000002
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
234944
235027
+
Tyr
GTA
[ENA]
¡û
>W1710542624
FNZH01000003
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
668106
668191
+
Tyr
GTA
[ENA]
¡û
>W1710562660
FOPC01000007
Bacteroidota
Algoriphagus hitonicola [FOPC]
117260
117345
+
Tyr
GTA
[ENA]
¡û
>W1710571386
FOVW01000004
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
309376
309461
+
Tyr
GTA
[ENA]
¡û
>W1710593068
FRCY01000009
Bacteroidota
Cyclobacterium lianum [FRCY]
83701
83784
+
Tyr
GTA
[ENA]
¡û
>W1710593740
FRXN01000004
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
343360
343443
+
Tyr
GTA
[ENA]
¡û
>W1710594236
FSRC01000004
Bacteroidota
Algoriphagus halophilus [FSRC]
321501
321586
+
Tyr
GTA
[ENA]
¡û
>W1710599285
FTOP01000008
Bacteroidota
Belliella pelovolcani [FTOP]
100259
100176
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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