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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100512 (115 seq.)
>W1711229983
LXZG01000094
Bacillota
Ligilactobacillus salivarius [LXZG]
268
353
+
Leu
TAG
[ENA]
¡û
>W1711687605
MSCR01000059
Bacillota
Ligilactobacillus salivarius [MSCR]
74
159
+
Leu
TAG
[ENA]
¡û
>W1711943440
NBDX01000004
Bacillota
Ligilactobacillus salivarius [NBDX]
363
448
+
Leu
TAG
[ENA]
¡û
>W1711943482
NBDY01000005
Bacillota
Ligilactobacillus salivarius [NBDY]
283
368
+
Leu
TAG
[ENA]
¡û
>W1711943528
NBDZ01000005
Bacillota
Ligilactobacillus salivarius [NBDZ]
283
368
+
Leu
TAG
[ENA]
¡û
>W1711943576
NBEA01000005
Bacillota
Ligilactobacillus salivarius [NBEA]
363
448
+
Leu
TAG
[ENA]
¡û
>W1711943647
NBEB01000166
Bacillota
Ligilactobacillus salivarius [NBEB]
154
69
-
Leu
TAG
[ENA]
¡û
>W1711943660
NBEC01000016
Bacillota
Ligilactobacillus salivarius [NBEC]
74
159
+
Leu
TAG
[ENA]
¡û
>W1711943715
NBED01000012
Bacillota
Ligilactobacillus salivarius [NBED]
149
234
+
Leu
TAG
[ENA]
¡û
>W1711943751
NBEE01000007
Bacillota
Ligilactobacillus salivarius [NBEE]
229
314
+
Leu
TAG
[ENA]
¡û
>W1711943784
NBEF01000008
Bacillota
Ligilactobacillus salivarius [NBEF]
74
159
+
Leu
TAG
[ENA]
¡û
>W1711943830
NBEG01000006
Bacillota
Ligilactobacillus salivarius [NBEG]
74
159
+
Leu
TAG
[ENA]
¡û
>W1711943880
NBEH01000006
Bacillota
Ligilactobacillus salivarius [NBEH]
149
234
+
Leu
TAG
[ENA]
¡û
>W1711943968
NBEI01000045
Bacillota
Ligilactobacillus salivarius [NBEI]
421
336
-
Leu
TAG
[ENA]
¡û
>W1711943975
NBEJ01000004
Bacillota
Ligilactobacillus salivarius [NBEJ]
229
314
+
Leu
TAG
[ENA]
¡û
>W1711944012
NBEK01000005
Bacillota
Ligilactobacillus salivarius [NBEK]
149
234
+
Leu
TAG
[ENA]
¡û
>W1711944064
NBEL01000004
Bacillota
Ligilactobacillus salivarius [NBEL]
229
314
+
Leu
TAG
[ENA]
¡û
>W1711944114
NBEM01000003
Bacillota
Ligilactobacillus salivarius [NBEM]
149
234
+
Leu
TAG
[ENA]
¡û
>W1711944159
NBEN01000003
Bacillota
Ligilactobacillus salivarius [NBEN]
283
368
+
Leu
TAG
[ENA]
¡û
>W1711944211
NBEO01000005
Bacillota
Ligilactobacillus salivarius [NBEO]
363
448
+
Leu
TAG
[ENA]
¡û
>W1711944283
NBEP01000061
Bacillota
Ligilactobacillus salivarius [NBEP]
13
98
+
Leu
TAG
[ENA]
¡û
>W1711944312
NBEQ01000005
Bacillota
Ligilactobacillus salivarius [NBEQ]
442
527
+
Leu
TAG
[ENA]
¡û
>W1711944398
NBER01000066
Bacillota
Ligilactobacillus salivarius [NBER]
328
243
-
Leu
TAG
[ENA]
¡û
>W1711944405
NBES01000008
Bacillota
Ligilactobacillus salivarius [NBES]
167
252
+
Leu
TAG
[ENA]
¡û
>W1711944492
NBET01000064
Bacillota
Ligilactobacillus salivarius [NBET]
246
161
-
Leu
TAG
[ENA]
¡û
>W1711944498
NBEU01000007
Bacillota
Ligilactobacillus salivarius [NBEU]
229
314
+
Leu
TAG
[ENA]
¡û
>W1711944586
NBEV01000088
Bacillota
Ligilactobacillus salivarius [NBEV]
154
69
-
Leu
TAG
[ENA]
¡û
>W1711944589
NBEW01000012
Bacillota
Ligilactobacillus salivarius [NBEW]
229
314
+
Leu
TAG
[ENA]
¡û
>W1711944625
NBEX01000015
Bacillota
Ligilactobacillus salivarius [NBEX]
229
314
+
Leu
TAG
[ENA]
¡û
>W1711944664
NBEY01000013
Bacillota
Ligilactobacillus salivarius [NBEY]
149
234
+
Leu
TAG
[ENA]
¡û
>W1712035978
NFHF01000010
Bacillota
Ligilactobacillus salivarius [NFHF]
133
218
+
Leu
TAG
[ENA]
¡û
>W1712036922
NFHV01000023
Bacillota
Ligilactobacillus salivarius [NFHV]
133
218
+
Leu
TAG
[ENA]
¡û
>W1712041943
NFLK01000008
Bacillota
Ligilactobacillus salivarius [NFLK]
3415
3500
+
Leu
TAG
[ENA]
¡û
>C171057150
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
279245
279160
-
Leu
TAG
-
¡û
>C171113772
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1609033
1608948
-
Leu
TAG
-
¡û
>C171128976
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1101412
1101497
+
Leu
TAG
-
¡û
>C012666
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
223013
223098
+
Leu
TAG
[Ensembl]
¡û
>WENV181199274
OERG01010290
[OERG] metagenome; Caecal content
76
161
+
Leu
TAG
[ENA]
¢þ
>WENV181454491
OGED01003601
[OGED] metagenome; Human gut stool
3112
3027
-
Leu
TAG
[ENA]
¢þ
>WENV181463388
OGEO01002177
[OGEO] metagenome; Human gut stool
9328
9413
+
Leu
TAG
[ENA]
¢þ
>WENV181483092
OGFK01000593
[OGFK] metagenome; Human gut stool
28934
28849
-
Leu
TAG
[ENA]
¢þ
>WENV181484695
OGFL01011673
[OGFL] metagenome; Human gut stool
2092
2007
-
Leu
TAG
[ENA]
¢þ
>W141146950
AWWH01000095
Bacillota
Ligilactobacillus equi DPC 6820 [AWWH]
66
148
+
Leu
TAG
[ENA]
¡û
>WENV181493154
OGFZ01008472
[OGFZ] metagenome; Human gut stool
307
222
-
Leu
TAG
[ENA]
¢þ
>WENV181519094
OGHB01005494
[OGHB] metagenome; Human gut stool
144
229
+
Leu
TAG
[ENA]
¢þ
>WENV181541361
OGIC01021168
[OGIC] metagenome; Human gut stool
647
562
-
Leu
TAG
[ENA]
¢þ
>WENV181558614
OGIX01009356
[OGIX] metagenome; Human gut stool
1082
997
-
Leu
TAG
[ENA]
¢þ
>WENV182008955
OHBJ01005462
[OHBJ] human gut metagenome; faeces
7374
7459
+
Leu
TAG
[ENA]
¢þ
>W141237645
BBJM01000018
Bacillota
Secundilactobacillus oryzae [BBJM]
33101
33018
-
Leu
TAG
[ENA]
¡û
>WENV182404231
OIEU01006848
[OIEU] human gut metagenome; human gut
296
381
+
Leu
TAG
[ENA]
¢þ
>W141256165
CBVR010000038
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
19902
19817
-
Leu
TAG
[ENA]
¡û
>WENV182976960
OKYB01015480
[OKYB] human gut metagenome; human gut
669
754
+
Leu
TAG
[ENA]
¢þ
>WENV183022902
OLFR01022203
[OLFR] human gut metagenome; human gut
224
309
+
Leu
TAG
[ENA]
¢þ
>WENV183132113
OLOB01000492
[OLOB] human gut metagenome; faeces
31641
31556
-
Leu
TAG
[ENA]
¢þ
>WENV183218236
OLQI01043865
[OLQI] human gut metagenome; faeces
52
137
+
Leu
TAG
[ENA]
¢þ
>WENV183427779
OMBN01000414
[OMBN] human gut metagenome; feces
144
229
+
Leu
TAG
[ENA]
¢þ
>WENV183428865
OMBO01000408
[OMBO] human gut metagenome; feces
29911
29826
-
Leu
TAG
[ENA]
¢þ
>WENV183493899
OMGJ01009687
[OMGJ] human gut metagenome; human gut
492
577
+
Leu
TAG
[ENA]
¢þ
>C181020770
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
1152776
1152692
-
Leu
TAG
-
¡û
>C181181998
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1202482
1202567
+
Leu
TAG
-
¡û
>W09123179
ACGT01000028
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
72375
72290
-
Leu
TAG
[ENA]
¡û
>W1910642955
LUGD01000066
Bacillota
Ligilactobacillus agilis UMNLA4 [LUGD]
383
467
+
Leu
TAG
[ENA]
¡û
>W1910643052
LUGE01000066
Bacillota
Ligilactobacillus agilis UMNLA5 [LUGE]
100611
100527
-
Leu
TAG
[ENA]
¡û
>W1910643113
LUGO01000030
Bacillota
Ligilactobacillus agilis UMNLA1 [LUGO]
100611
100527
-
Leu
TAG
[ENA]
¡û
>W1910643174
LUGP01000002
Bacillota
Ligilactobacillus agilis UMNLA2 [LUGP]
100610
100526
-
Leu
TAG
[ENA]
¡û
>W1910643269
LUGQ01000052
Bacillota
Ligilactobacillus agilis UMNLA3 [LUGQ]
383
467
+
Leu
TAG
[ENA]
¡û
>W1910649420
LXYX01000144
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
24508
24423
-
Leu
TAG
[ENA]
¡û
>W1910649481
LXYY01000026
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
262
347
+
Leu
TAG
[ENA]
¡û
>W1910649571
LXZA01000028
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
338
423
+
Leu
TAG
[ENA]
¡û
>W1910649644
LXZB01000075
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
916
831
-
Leu
TAG
[ENA]
¡û
>W1910649675
LXZC01000008
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
24083
24168
+
Leu
TAG
[ENA]
¡û
>W1910649725
LXZD01000053
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
1457
1372
-
Leu
TAG
[ENA]
¡û
>W1910649767
LXZD01000177
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
170
255
+
Leu
TAG
[ENA]
¡û
>W1910649819
LXZE01000172
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
105
190
+
Leu
TAG
[ENA]
¡û
>W1910649860
LXZF01000034
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
19443
19358
-
Leu
TAG
[ENA]
¡û
>W1910649916
LXZH01000044
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
23625
23540
-
Leu
TAG
[ENA]
¡û
>W1910650072
LXZL01000054
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
19325
19240
-
Leu
TAG
[ENA]
¡û
>W1910650141
LXZM01000079
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
170
255
+
Leu
TAG
[ENA]
¡û
>W1910650194
LXZO01000098
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
23632
23547
-
Leu
TAG
[ENA]
¡û
>W1910650259
LXZP01000096
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
262
347
+
Leu
TAG
[ENA]
¡û
>W1910650306
LXZQ01000043
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
23632
23547
-
Leu
TAG
[ENA]
¡û
>W1910650362
LXZR01000041
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
23634
23549
-
Leu
TAG
[ENA]
¡û
>W1910650452
LXZT01000006
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
187
102
-
Leu
TAG
[ENA]
¡û
>W1910650497
LXZT01000103
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
832
747
-
Leu
TAG
[ENA]
¡û
>W1910652402
LYQO01000104
Bacillota
Ligilactobacillus agilis UMNLA6 [LYQO]
383
467
+
Leu
TAG
[ENA]
¡û
>W1910652430
LYQP01000047
Bacillota
Ligilactobacillus agilis UMNLA7 [LYQP]
100610
100526
-
Leu
TAG
[ENA]
¡û
>W1910652559
LYQQ01000059
Bacillota
Ligilactobacillus agilis UMNLA8 [LYQQ]
100610
100526
-
Leu
TAG
[ENA]
¡û
>W1910874518
NDYW01000011
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
422
507
+
Leu
TAG
[ENA]
¡û
>W1911569798
PCZA01000031
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
19846
19761
-
Leu
TAG
[ENA]
¡û
>W1911570221
PCZH01000168
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
69
154
+
Leu
TAG
[ENA]
¡û
>W1810070417
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1556226
1556311
+
Leu
TAG
[ENA]
¡û
>W1810185941
PKGM01000042
Bacillota
Ligilactobacillus agilis 273 [PKGM]
111
195
+
Leu
TAG
[ENA]
¡û
>W1810472417
QAGU01000040
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
141
226
+
Leu
TAG
[ENA]
¡û
>W1810472481
QAGV01000036
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
221
136
-
Leu
TAG
[ENA]
¡û
>W1810488245
QAZF01000058
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
221
136
-
Leu
TAG
[ENA]
¡û
>W1810488268
QAZG01000006
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
122750
122665
-
Leu
TAG
[ENA]
¡û
>W1810584346
QFAS01000006
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
467
552
+
Leu
TAG
[ENA]
¡û
>W1810838187
QSTB01000031
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
472
557
+
Leu
TAG
[ENA]
¡û
>C151030896
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
245586
245671
+
Leu
TAG
[Ensembl]
¡û
>C151082275
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
222464
222549
+
Leu
TAG
[Ensembl]
¡û
>W10124235
AEBA01000015
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
13
98
+
Leu
TAG
[ENA]
¡û
>C10109012
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
223516
223601
+
Leu
TAG
[Ensembl]
¡û
>W1510650349
CVQY01000016
Bacillota
Ligilactobacillus agilis Marseille [CVQY]
768
684
-
Leu
TAG
[ENA]
¡û
>W1511441062
JUQA01000102
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
68
153
+
Leu
TAG
[ENA]
¡û
>W1511443813
JUTI01000038
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
77
162
+
Leu
TAG
[ENA]
¡û
>W11131123
AEBA01000015
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
13
98
+
Leu
TAG
[ENA]
¡û
>W11167248
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
122588
122503
-
Leu
TAG
[ENA]
¡û
>W11168560
AFOI01000001
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
74952
74867
-
Leu
TAG
[ENA]
¡û
>W121045101
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
175602
175687
+
Leu
TAG
[ENA]
¡û
>W1610031162
AYYP01000022
Bacillota
Ligilactobacillus agilis DSM 20509 [AYYP]
67
151
+
Leu
TAG
[ENA]
¡û
>W1610036459
AZFH01000177
Bacillota
Ligilactobacillus equi DSM 15833 = JCM 10991 [AZFH]
187
269
+
Leu
TAG
[ENA]
¡û
>W1610045009
BBAZ01000017
Bacillota
Secundilactobacillus oryzae JCM 18671 [BBAZ]
8825
8908
+
Leu
TAG
[ENA]
¡û
>W1710028114
AYYP01000022
Bacillota
Ligilactobacillus agilis DSM 20509 [AYYP]
67
151
+
Leu
TAG
[ENA]
¡û
>W1710033498
AZFH01000177
Bacillota
Ligilactobacillus equi DSM 15833 = JCM 10991 [AZFH]
187
269
+
Leu
TAG
[ENA]
¡û
>W1710042107
BBAZ01000017
Bacillota
Secundilactobacillus oryzae JCM 18671 [BBAZ]
8825
8908
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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