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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100592 (27 seq.)
>W1711947653
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
558563
558479
-
Leu
TAG
[ENA]
¡û
>C171034448
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
616154
616238
+
Leu
TAG
-
¡û
>C171108411
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
873715
873631
-
Leu
TAG
-
¡û
>w014276
AAOH01000014
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
557
471
-
Leu
TAG
[ENA]
¡û
>w014252
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
404186
404100
-
Leu
TAG
[ENA]
¡û
>w014250
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
404451
404365
-
Leu
TAG
[ENA]
¡û
>w014249
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
404602
404516
-
Leu
TAG
[ENA]
¡û
>WENV182540226
OJAF01000407
[OJAF] seawater metagenome; Sea water
2511
2595
+
Leu
TAG
[ENA]
¢þ
>WENV182541868
OJAU01014598
[OJAU] seawater metagenome; Sea water
98
14
-
Leu
TAG
[ENA]
¢þ
>WENV182542006
OJAV01000245
[OJAV] seawater metagenome; Sea water
23688
23772
+
Leu
TAG
[ENA]
¢þ
>WENV182546422
OJBO01024909
[OJBO] seawater metagenome; Sea water
117
33
-
Leu
TAG
[ENA]
¢þ
>WENV182549231
OJBY01000018
[OJBY] seawater metagenome; Sea water
26987
26903
-
Leu
TAG
[ENA]
¢þ
>WENV182552470
OJCK01000235
[OJCK] seawater metagenome; Sea water
23689
23773
+
Leu
TAG
[ENA]
¢þ
>WENV182573128
OJFP01000149
[OJFP] seawater metagenome; Sea water
23688
23772
+
Leu
TAG
[ENA]
¢þ
>WENV182588814
OJHY01000132
[OJHY] seawater metagenome; Sea water
22232
22148
-
Leu
TAG
[ENA]
¢þ
>WENV182590610
OJIJ01000338
[OJIJ] seawater metagenome; Sea water
3251
3335
+
Leu
TAG
[ENA]
¢þ
>WENV182591751
OJIO01003689
[OJIO] seawater metagenome; Sea water
209
125
-
Leu
TAG
[ENA]
¢þ
>WENV182594014
OJIV01000053
[OJIV] seawater metagenome; Sea water
23690
23774
+
Leu
TAG
[ENA]
¢þ
>WENV183059743
OLHV01001879
[OLHV] seawater metagenome; Sea water
1809
1893
+
Leu
TAG
[ENA]
¢þ
>WENV183522311
OMOM01002784
[OMOM] seawater metagenome; Sea water
260
344
+
Leu
TAG
[ENA]
¢þ
>WENV170780778
MAAB01021308
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
218
134
-
Leu
TAG
[ENA]
¢þ
>C181010505
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1359509
1359425
-
Leu
TAG
-
¡û
>C181010509
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1359073
1358989
-
Leu
TAG
-
¡û
>C181010510
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1358922
1358838
-
Leu
TAG
-
¡û
>C181010512
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1358657
1358573
-
Leu
TAG
-
¡û
>C181169978
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1151986
1151902
-
Leu
TAG
-
¡û
>W1910796193
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2105854
2105938
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK