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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100698 (37 seq.)
>C171127311
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
83567
83482
-
Leu
TAA
-
¡û
>C171127320
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
644461
644546
+
Leu
TAA
-
¡û
>C171127364
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
196457
196372
-
Leu
TAA
-
¡û
>C171127373
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
697041
697126
+
Leu
TAA
-
¡û
>C171127399
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
436710
436795
+
Leu
TAA
-
¡û
>C026064
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
349840
349925
+
Leu
TAA
[Ensembl]
¡û
>w025456
AAZT01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
84248
84335
+
Leu
TAA
[ENA]
¡û
>w025428
AAZS01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
96324
96237
-
Leu
TAA
[ENA]
¡û
>w025402
AAZR01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
5967
6054
+
Leu
TAA
[ENA]
¡û
>w025371
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
577223
577136
-
Leu
TAA
[ENA]
¡û
>w024339
AAYQ01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
36855
36768
-
Leu
TAA
[ENA]
¡û
>w024329
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
203470
203557
+
Leu
TAA
[ENA]
¡û
>w024303
AAYO01000008
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
38769
38856
+
Leu
TAA
[ENA]
¡û
>w024270
AAYN01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
109405
109318
-
Leu
TAA
[ENA]
¡û
>w024246
AAYM01000004
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
47480
47567
+
Leu
TAA
[ENA]
¡û
>WENV180225690
OBBO01000018
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
87882
87797
-
Leu
TAA
[ENA]
¢þ
>WENV180554104
OCJM01000079
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
216
131
-
Leu
TAA
[ENA]
¢þ
>WENV180822787
ODJV01002847
[ODJV] human metagenome; G_DNA_Posterior fornix
147
62
-
Leu
TAA
[ENA]
¢þ
>W08002244
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
204054
204139
+
Leu
TAA
[ENA]
¡û
>W08002253
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
650835
650920
+
Leu
TAA
[ENA]
¡û
>W08002298
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
96744
96662
-
Leu
TAA
[ENA]
¡û
>W08002325
ABEV01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
37236
37154
-
Leu
TAA
[ENA]
¡û
>W08002828
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
86291
86209
-
Leu
TAA
[ENA]
¡û
>C08011089
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
349879
349964
+
Leu
TAA
[Ensembl]
¡û
>C191003508
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
168850
168935
+
Leu
TAA
-
¡û
>C09110774
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
347852
347937
+
Leu
TAA
[Ensembl]
¡û
>W1911824657
QZWO01000036
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
2039
1954
-
Leu
TAA
[ENA]
¡û
>W1810735661
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
174451
174536
+
Leu
TAA
[ENA]
¡û
>W1810735687
QOKU01000055
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
6291
6376
+
Leu
TAA
[ENA]
¡û
>W1810757237
QPHI01000041
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
10006
10091
+
Leu
TAA
[ENA]
¡û
>W1810757263
QPHJ01000049
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
10100
10185
+
Leu
TAA
[ENA]
¡û
>W1810757289
QPHK01000073
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
10028
10113
+
Leu
TAA
[ENA]
¡û
>C151002398
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
576579
576494
-
Leu
TAA
[Ensembl]
¡û
>W121060670
AJFX01000013
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
66001
65916
-
Leu
TAA
[ENA]
¡û
>W121060675
AJFY01000003
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
96564
96479
-
Leu
TAA
[ENA]
¡û
>W121060723
AJFZ01000009
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
105905
105820
-
Leu
TAA
[ENA]
¡û
>W121060750
AJGA01000012
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
66000
65915
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK