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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100708 (79 seq.)
>W1710857575
LMAJ01000009
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
26898
26983
+
Leu
GAG
[ENA]
¡û
>W1710862222
LMEF01000014
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
6022
6107
+
Leu
GAG
[ENA]
¡û
>W1710872483
LMMA01000005
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
106037
105954
-
Leu
GAG
[ENA]
¡û
>W1711138935
LVEN01000042
Bacteroidota
Flavobacterium piscis [LVEN]
465886
465801
-
Leu
GAG
[ENA]
¡û
>W1711139048
LVEP01000059
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
7157
7242
+
Leu
GAG
[ENA]
¡û
>W131214051
ATTM01000005
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
275980
275897
-
Leu
GAG
[ENA]
¡û
>W131225399
AUDO01000001
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
160380
160465
+
Leu
GAG
[ENA]
¡û
>W131227003
AUEU01000016
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
29838
29923
+
Leu
GAG
[ENA]
¡û
>W131237953
AUSH01000081
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
95033
94948
-
Leu
GAG
[ENA]
¡û
>W1711712528
MTCA01000060
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
13731
13816
+
Leu
GAG
[ENA]
¡û
>W1711744042
MUFX01000001
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
1312101
1312018
-
Leu
GAG
[ENA]
¡û
>W1711748521
MULJ01000001
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
1000368
1000453
+
Leu
GAG
[ENA]
¡û
>W1711751626
MUNX01000060
Bacteroidota
Flavobacterium sp. A45 [MUNX]
34623
34706
+
Leu
GAG
[ENA]
¡û
>W1711966544
NCWQ01000036
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
64874
64789
-
Leu
GAG
[ENA]
¡û
>C171063330
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
4269746
4269829
+
Leu
GAG
-
¡û
>C171066024
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
2853096
2853011
-
Leu
GAG
-
¡û
>WENV180391020
OBPM01001510
[OBPM] marine metagenome; ENVO:00002010
1895
1978
+
Leu
GAG
[ENA]
¢þ
>WENV180594094
OCOY01034750
[OCOY] marine metagenome; ENVO:00002010
392
309
-
Leu
GAG
[ENA]
¢þ
>WENV181384207
OFRH01036215
[OFRH] wastewater metagenome; Exp Tend NO 100WW
510
427
-
Leu
GAG
[ENA]
¢þ
>W141289770
JARP01000003
Bacteroidota
Flavobacterium sp. KJJ [JARP]
416717
416634
-
Leu
GAG
[ENA]
¡û
>W141291958
JATV01000017
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
67239
67156
-
Leu
GAG
[ENA]
¡û
>C181047440
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
2479162
2479079
-
Leu
GAG
-
¡û
>C181190969
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
53486
53569
+
Leu
GAG
-
¡û
>C191099789
CP033068
Bacteroidota
Flavobacterium sp. 140616W15 [CP033068]
3010691
3010774
+
Leu
GAG
-
¡û
>C191155254
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
1562742
1562659
-
Leu
GAG
-
¡û
>C191161903
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
2963901
2963984
+
Leu
GAG
-
¡û
>W141727195
JNCP01000004
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
28487
28570
+
Leu
GAG
[ENA]
¡û
>W141809371
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
53780
53697
-
Leu
GAG
[ENA]
¡û
>W141809437
JPRM01000059
Bacteroidota
Flavobacterium hydatis [JPRM]
18141
18056
-
Leu
GAG
[ENA]
¡û
>W141816555
JQJY01000005
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
28375
28460
+
Leu
GAG
[ENA]
¡û
>W1910547033
FZNL01000015
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
134114
134031
-
Leu
GAG
[ENA]
¡û
>W1910792985
MRCQ01000003
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
27424
27507
+
Leu
GAG
[ENA]
¡û
>W1910805354
MTQF01000007
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
421665
421580
-
Leu
GAG
[ENA]
¡û
>W1910808832
MUGR01000006
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
21943
21860
-
Leu
GAG
[ENA]
¡û
>W1910808901
MUGS01000030
Bacteroidota
Flavobacterium araucananum DSM 24704 [MUGS]
89597
89514
-
Leu
GAG
[ENA]
¡û
>W1910808948
MUGT01000090
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
15885
15802
-
Leu
GAG
[ENA]
¡û
>W1910809054
MUGV01000029
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
105637
105552
-
Leu
GAG
[ENA]
¡û
>W1910809172
MUGX01000053
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
105
22
-
Leu
GAG
[ENA]
¡û
>W1910809202
MUGY01000011
Bacteroidota
Flavobacterium hydatis ATCC 29551 [MUGY]
78535
78452
-
Leu
GAG
[ENA]
¡û
>W1910809339
MUHB01000003
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
667824
667741
-
Leu
GAG
[ENA]
¡û
>W1910809407
MUHC01000025
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
132712
132629
-
Leu
GAG
[ENA]
¡û
>W1910809559
MUHF01000020
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
30857
30940
+
Leu
GAG
[ENA]
¡û
>W1911564293
PCMW01000092
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
56
139
+
Leu
GAG
[ENA]
¡û
>W1911747565
QWDM01000013
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
29560
29643
+
Leu
GAG
[ENA]
¡û
>W1911747624
QWDN01000016
Bacteroidota
Flavobacterium circumlabens CCM 8828 [QWDN]
666
583
-
Leu
GAG
[ENA]
¡û
>W1810071528
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
1961666
1961749
+
Leu
GAG
[ENA]
¡û
>W1810089359
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
142515
142432
-
Leu
GAG
[ENA]
¡û
>W1810121178
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
3356386
3356303
-
Leu
GAG
[ENA]
¡û
>W1810265879
PQVG01000014
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
13144
13061
-
Leu
GAG
[ENA]
¡û
>W1810365415
PVUB01000001
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
481503
481586
+
Leu
GAG
[ENA]
¡û
>W1810475404
QAIZ01000977
Bacteroidota
Flavobacterium sp. HMWF030 [QAIZ]
986
903
-
Leu
GAG
[ENA]
¡û
>W1810530645
QCWV01000100
Bacteroidota
Flavobacterium sp. WLB [QCWV]
18203
18286
+
Leu
GAG
[ENA]
¡û
>W1810577011
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
3134180
3134097
-
Leu
GAG
[ENA]
¡û
>W1810580571
QETH01000052
Bacteroidota
Flavobacterium sp. HTF [QETH]
24812
24727
-
Leu
GAG
[ENA]
¡û
>W1810596070
QGGJ01000008
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
30055
30138
+
Leu
GAG
[ENA]
¡û
>W1810672640
QJTO01000002
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
29799
29882
+
Leu
GAG
[ENA]
¡û
>W1810676033
QKLS01000002
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
29799
29882
+
Leu
GAG
[ENA]
¡û
>W1810684409
QKXH01000008
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
41586
41669
+
Leu
GAG
[ENA]
¡û
>W1810861178
QTTR01000005
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
535309
535226
-
Leu
GAG
[ENA]
¡û
>W1511311966
JPRK01000001
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
31678
31763
+
Leu
GAG
[ENA]
¡û
>W1511391038
JSYO01000053
Bacteroidota
Flavobacterium sp. JRM [JSYO]
3255
3340
+
Leu
GAG
[ENA]
¡û
>W1511391077
JSYP01000004
Bacteroidota
Flavobacterium sp. KMS [JSYP]
3366
3451
+
Leu
GAG
[ENA]
¡û
>W1511508996
JXQR01000076
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
125543
125458
-
Leu
GAG
[ENA]
¡û
>W1511656856
LEKS01000003
Bacteroidota
Flavobacterium sp. ABG [LEKS]
30974
31057
+
Leu
GAG
[ENA]
¡û
>C121017021
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
2485144
2485059
-
Leu
GAG
[Ensembl]
¡û
>W1610534854
JRLF01000004
Bacteroidota
Flavobacterium aquidurense [JRLF]
33119
33204
+
Leu
GAG
[ENA]
¡û
>W1610719956
LMAJ01000009
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
26898
26983
+
Leu
GAG
[ENA]
¡û
>W1610724568
LMEF01000014
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
6022
6107
+
Leu
GAG
[ENA]
¡û
>W1610734829
LMMA01000005
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
106037
105954
-
Leu
GAG
[ENA]
¡û
>W1610949943
LVEN01000042
Bacteroidota
Flavobacterium piscis [LVEN]
465886
465801
-
Leu
GAG
[ENA]
¡û
>W1610950056
LVEP01000059
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
7157
7242
+
Leu
GAG
[ENA]
¡û
>W1710531660
FNPS01000003
Bacteroidota
Flavobacterium aquidurense [FNPS]
539801
539716
-
Leu
GAG
[ENA]
¡û
>W1710559019
FOMH01000013
Bacteroidota
Flavobacterium phragmitis [FOMH]
149411
149326
-
Leu
GAG
[ENA]
¡û
>W1710569841
FOUT01000001
Bacteroidota
Flavobacterium succinicans [FOUT]
980484
980401
-
Leu
GAG
[ENA]
¡û
>W1710585309
FQWG01000028
Bacteroidota
Flavobacterium frigidimaris [FQWG]
22018
21935
-
Leu
GAG
[ENA]
¡û
>W1710585699
FQWO01000001
Bacteroidota
Flavobacterium granuli [FQWO]
481503
481586
+
Leu
GAG
[ENA]
¡û
>W1710591695
FRBX01000004
Bacteroidota
Flavobacterium pectinovorum [FRBX]
652207
652122
-
Leu
GAG
[ENA]
¡û
>W1710637090
JRLF01000004
Bacteroidota
Flavobacterium aquidurense [JRLF]
33119
33204
+
Leu
GAG
[ENA]
¡û
>W1710756350
LIAC01000017
Bacteroidota
Flavobacterium sp. NLM [LIAC]
24810
24895
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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