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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100936 (15 seq.)
>C009990
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
682062
682147
+
Tyr
GTA
[Ensembl]
¡û
>C010113
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
3147467
3147382
-
Tyr
GTA
[Ensembl]
¡û
>WENV180265450
OBEQ011660003
[OBEQ] groundwater metagenome; groundwater
878
963
+
Tyr
GTA
[ENA]
¢þ
>WENV170003995
AGTN01528669
[AGTN] bioreactor metagenome; poplar biomass
386
471
+
Tyr
GTA
[ENA]
¢þ
>WENV170661381
JXWV01017755
[JXWV] soil metagenome; rice field; organic FYM Plot
296
211
-
Tyr
GTA
[ENA]
¢þ
>WENV170662279
JXWW01027391
[JXWW] soil metagenome; rice field; organic GM Plot
122
207
+
Tyr
GTA
[ENA]
¢þ
>W09100187
AAAS03000001
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
302116
302201
+
Tyr
GTA
[ENA]
¡û
>C191000622
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
3070223
3070138
-
Tyr
GTA
-
¡û
>C151059717
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
725434
725519
+
Tyr
GTA
[Ensembl]
¡û
>W1510006455
BAZF01000018
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
41743
41658
-
Tyr
GTA
[ENA]
¡û
>C10107455
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
3041798
3041713
-
Tyr
GTA
[Ensembl]
¡û
>W1511501008
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
2605820
2605735
-
Tyr
GTA
[ENA]
¡û
>C161025467
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
1247429
1247344
-
Tyr
GTA
[Ensembl]
¡û
>C161080253
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2949780
2949695
-
Tyr
GTA
-
¡û
>W121010746
AGJM01000062
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
11473
11558
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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