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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101000 (147 seq.)
>W1711055678
LRVC01000085
Bacillota
Megasphaera sp. MJR8396C [LRVC]
777
692
-
Tyr
GTA
[ENA]
¡û
>W131109488
APHX01000004
Bacillota
Megasphaera sp. BL7 [APHX]
54868
54953
+
Tyr
GTA
[ENA]
¡û
>W131109606
APHY01000077
Bacillota
Megasphaera sp. NM10 [APHY]
13481
13396
-
Tyr
GTA
[ENA]
¡û
>W1711120556
LUGJ01000030
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
4632
4547
-
Tyr
GTA
[ENA]
¡û
>W131251572
CAVO010000007
Bacillota
Megasphaera massiliensis NP3 [CAVO]
1288
1203
-
Tyr
GTA
[ENA]
¡û
>W1711658798
MQNM01000035
Bacillota
Megasphaera cerevisiae [MQNM]
28577
28662
+
Tyr
GTA
[ENA]
¡û
>W1712038450
NFIY01000009
Bacillota
Megasphaera sp. An286 [NFIY]
622
537
-
Tyr
GTA
[ENA]
¡û
>WENV180119150
OASD01014039
[OASD] human gut metagenome; ENVO:feces
125
210
+
Tyr
GTA
[ENA]
¢þ
>WENV180184600
OAWS01000752
[OAWS] human gut metagenome; faeces
10285
10370
+
Tyr
GTA
[ENA]
¢þ
>WENV180235271
OBCT01023224
[OBCT] human gut metagenome; human gut
258
343
+
Tyr
GTA
[ENA]
¢þ
>WENV180235795
OBCU01000895
[OBCU] human gut metagenome; human gut
285
200
-
Tyr
GTA
[ENA]
¢þ
>WENV180286901
OBII01035208
[OBII] human gut metagenome; feces
500
585
+
Tyr
GTA
[ENA]
¢þ
>WENV180289653
OBIU01000044
[OBIU] human gut metagenome; human gut
89812
89897
+
Tyr
GTA
[ENA]
¢þ
>WENV180305790
OBJO01004108
[OBJO] human gut metagenome; human gut
665
750
+
Tyr
GTA
[ENA]
¢þ
>WENV180339534
OBLI01005572
[OBLI] pig gut metagenome; faeces
1794
1709
-
Tyr
GTA
[ENA]
¢þ
>WENV180402718
OBRQ01016085
[OBRQ] human gut metagenome; ENVO:feces
183
268
+
Tyr
GTA
[ENA]
¢þ
>WENV180575814
OCLY01012561
[OCLY] human gut metagenome; human gut
865
950
+
Tyr
GTA
[ENA]
¢þ
>WENV180578746
OCMC01001161
[OCMC] human gut metagenome; human gut
7138
7223
+
Tyr
GTA
[ENA]
¢þ
>WENV180737920
ODHC01028450
[ODHC] human metagenome; G_DNA_Stool
204
289
+
Tyr
GTA
[ENA]
¢þ
>WENV180841002
ODKJ01026694
[ODKJ] human metagenome; G_DNA_Stool
287
372
+
Tyr
GTA
[ENA]
¢þ
>WENV180995867
ODVR01024876
[ODVR] human metagenome; G_DNA_Stool
128
43
-
Tyr
GTA
[ENA]
¢þ
>WENV181336922
OFME01000154
[OFME] human gut metagenome; human gut
57862
57947
+
Tyr
GTA
[ENA]
¢þ
>WENV181340871
OFMH01002462
[OFMH] human gut metagenome; human gut
797
712
-
Tyr
GTA
[ENA]
¢þ
>WENV181354997
OFMT01000225
[OFMT] human gut metagenome; human gut
153
68
-
Tyr
GTA
[ENA]
¢þ
>WENV181394891
OFRZ01001514
[OFRZ] human gut metagenome; human gut
2031
1946
-
Tyr
GTA
[ENA]
¢þ
>WENV181395981
OFSC01000076
[OFSC] human gut metagenome; human gut
41220
41305
+
Tyr
GTA
[ENA]
¢þ
>WENV181420848
OGCN01007089
[OGCN] human gut metagenome; human gut
7225
7310
+
Tyr
GTA
[ENA]
¢þ
>WENV181435221
OGDF01002776
[OGDF] human gut metagenome; human gut
11689
11774
+
Tyr
GTA
[ENA]
¢þ
>WENV181456735
OGEH01000230
[OGEH] metagenome; Human gut stool
25427
25512
+
Tyr
GTA
[ENA]
¢þ
>WENV181464703
OGEP01002254
[OGEP] metagenome; Human gut stool
15679
15764
+
Tyr
GTA
[ENA]
¢þ
>WENV181489044
OGFR01008531
[OGFR] metagenome; Human gut stool
1552
1467
-
Tyr
GTA
[ENA]
¢þ
>WENV181506258
OGGM01000503
[OGGM] metagenome; Human gut stool
16345
16430
+
Tyr
GTA
[ENA]
¢þ
>WENV181511647
OGGS01004562
[OGGS] metagenome; Human gut stool
5553
5638
+
Tyr
GTA
[ENA]
¢þ
>WENV181555122
OGIT01000034
[OGIT] metagenome; Human gut stool
108501
108416
-
Tyr
GTA
[ENA]
¢þ
>WENV181577470
OGJX01001415
[OGJX] metagenome; Human gut stool
2092
2007
-
Tyr
GTA
[ENA]
¢þ
>WENV181675878
OGOP01015753
[OGOP] human gut metagenome; faeces
1842
1927
+
Tyr
GTA
[ENA]
¢þ
>WENV181775258
OGRF01001571
[OGRF] human gut metagenome; faeces
2592
2507
-
Tyr
GTA
[ENA]
¢þ
>WENV181868520
OGWX01000482
[OGWX] human gut metagenome; faeces
26736
26821
+
Tyr
GTA
[ENA]
¢þ
>WENV181871578
OGWZ01000297
[OGWZ] human gut metagenome; faeces
879
794
-
Tyr
GTA
[ENA]
¢þ
>WENV181876346
OGXC01006283
[OGXC] human gut metagenome; faeces
571
656
+
Tyr
GTA
[ENA]
¢þ
>WENV181885430
OGXJ01018232
[OGXJ] human gut metagenome; faeces
132
47
-
Tyr
GTA
[ENA]
¢þ
>WENV181885723
OGXK01000026
[OGXK] human gut metagenome; faeces
568
483
-
Tyr
GTA
[ENA]
¢þ
>WENV181905360
OGXY01000071
[OGXY] human gut metagenome; faeces
43573
43488
-
Tyr
GTA
[ENA]
¢þ
>WENV181911309
OGYD01000892
[OGYD] human gut metagenome; faeces
12239
12154
-
Tyr
GTA
[ENA]
¢þ
>WENV181912991
OGYE01002113
[OGYE] human gut metagenome; faeces
143
58
-
Tyr
GTA
[ENA]
¢þ
>WENV181923364
OGYL01000312
[OGYL] human gut metagenome; faeces
25445
25530
+
Tyr
GTA
[ENA]
¢þ
>WENV181931437
OGYQ01000432
[OGYQ] human gut metagenome; faeces
35698
35783
+
Tyr
GTA
[ENA]
¢þ
>WENV181933881
OGYT01000257
[OGYT] human gut metagenome; faeces
16864
16779
-
Tyr
GTA
[ENA]
¢þ
>WENV181936294
OGYV01000669
[OGYV] human gut metagenome; faeces
26277
26362
+
Tyr
GTA
[ENA]
¢þ
>WENV181939782
OGYX01005446
[OGYX] human gut metagenome; faeces
5267
5182
-
Tyr
GTA
[ENA]
¢þ
>WENV181945371
OGZB01005513
[OGZB] human gut metagenome; faeces
2217
2132
-
Tyr
GTA
[ENA]
¢þ
>WENV181949266
OGZF01000804
[OGZF] human gut metagenome; faeces
2038
1953
-
Tyr
GTA
[ENA]
¢þ
>WENV181952727
OGZI01000767
[OGZI] human gut metagenome; faeces
25431
25516
+
Tyr
GTA
[ENA]
¢þ
>WENV181958895
OGZM01000787
[OGZM] human gut metagenome; faeces
21824
21739
-
Tyr
GTA
[ENA]
¢þ
>WENV181969869
OGZX01000817
[OGZX] human gut metagenome; faeces
23156
23071
-
Tyr
GTA
[ENA]
¢þ
>WENV181976157
OHAD01000387
[OHAD] human gut metagenome; faeces
12179
12094
-
Tyr
GTA
[ENA]
¢þ
>WENV181990553
OHAP01005700
[OHAP] human gut metagenome; faeces
247
162
-
Tyr
GTA
[ENA]
¢þ
>WENV182008585
OHBJ01001787
[OHBJ] human gut metagenome; faeces
12729
12814
+
Tyr
GTA
[ENA]
¢þ
>WENV182080631
OHGI01001815
[OHGI] human gut metagenome; feces
1455
1540
+
Tyr
GTA
[ENA]
¢þ
>WENV182166148
OHMP01001020
[OHMP] human gut metagenome; feces
10968
11053
+
Tyr
GTA
[ENA]
¢þ
>WENV182207983
OHPX01000153
[OHPX] human gut metagenome; feces
32731
32646
-
Tyr
GTA
[ENA]
¢þ
>WENV182248791
OHSP01000830
[OHSP] human gut metagenome; feces
13205
13290
+
Tyr
GTA
[ENA]
¢þ
>WENV182273601
OHUJ01001703
[OHUJ] human gut metagenome; feces
1991
1906
-
Tyr
GTA
[ENA]
¢þ
>WENV182291269
OHVZ01000715
[OHVZ] human gut metagenome; feces
1042
957
-
Tyr
GTA
[ENA]
¢þ
>WENV182292792
OHWB01009157
[OHWB] human gut metagenome; feces
743
828
+
Tyr
GTA
[ENA]
¢þ
>WENV182334427
OHZM01011077
[OHZM] human gut metagenome; feces
1185
1270
+
Tyr
GTA
[ENA]
¢þ
>WENV182336335
OHZS01014989
[OHZS] human gut metagenome; feces
1237
1322
+
Tyr
GTA
[ENA]
¢þ
>WENV182353229
OIBL01001120
[OIBL] human gut metagenome; feces
1990
1905
-
Tyr
GTA
[ENA]
¢þ
>WENV182361616
OICD01000324
[OICD] human gut metagenome; feces
13989
13904
-
Tyr
GTA
[ENA]
¢þ
>WENV182370595
OICT01001349
[OICT] human gut metagenome; feces
2095
2010
-
Tyr
GTA
[ENA]
¢þ
>WENV182375768
OIDD01000319
[OIDD] human gut metagenome; feces
25789
25874
+
Tyr
GTA
[ENA]
¢þ
>WENV182389720
OIED01002536
[OIED] human gut metagenome; feces
629
544
-
Tyr
GTA
[ENA]
¢þ
>WENV182516964
OIWO01000803
[OIWO] human gut metagenome; faeces
26734
26819
+
Tyr
GTA
[ENA]
¢þ
>WENV182524510
OIWT01000275
[OIWT] human gut metagenome; faeces
70305
70390
+
Tyr
GTA
[ENA]
¢þ
>WENV182659546
OJML01019741
[OJML] human gut metagenome; feces
1136
1051
-
Tyr
GTA
[ENA]
¢þ
>WENV182767341
OJRV01000261
[OJRV] human gut metagenome; human gut
61402
61487
+
Tyr
GTA
[ENA]
¢þ
>WENV182768980
OJRW01000137
[OJRW] human gut metagenome; human gut
14597
14512
-
Tyr
GTA
[ENA]
¢þ
>WENV182770488
OJRX01000252
[OJRX] human gut metagenome; human gut
61402
61487
+
Tyr
GTA
[ENA]
¢þ
>WENV182772247
OJRY01000688
[OJRY] human gut metagenome; human gut
2092
2007
-
Tyr
GTA
[ENA]
¢þ
>WENV182773234
OJRZ01000162
[OJRZ] human gut metagenome; human gut
13794
13709
-
Tyr
GTA
[ENA]
¢þ
>WENV182774464
OJSA01000190
[OJSA] human gut metagenome; human gut
61583
61668
+
Tyr
GTA
[ENA]
¢þ
>WENV182775889
OJSB01000678
[OJSB] human gut metagenome; human gut
3579
3664
+
Tyr
GTA
[ENA]
¢þ
>WENV182776902
OJSC01000228
[OJSC] human gut metagenome; human gut
61402
61487
+
Tyr
GTA
[ENA]
¢þ
>WENV182778750
OJSD01000396
[OJSD] human gut metagenome; human gut
12245
12160
-
Tyr
GTA
[ENA]
¢þ
>WENV182780652
OJSE01000439
[OJSE] human gut metagenome; human gut
12245
12160
-
Tyr
GTA
[ENA]
¢þ
>WENV182782413
OJSF01000183
[OJSF] human gut metagenome; human gut
12245
12160
-
Tyr
GTA
[ENA]
¢þ
>WENV182783505
OJSG01000185
[OJSG] human gut metagenome; human gut
2184
2099
-
Tyr
GTA
[ENA]
¢þ
>WENV182784455
OJSH01000198
[OJSH] human gut metagenome; human gut
61583
61668
+
Tyr
GTA
[ENA]
¢þ
>WENV182785643
OJSI01000210
[OJSI] human gut metagenome; human gut
71994
72079
+
Tyr
GTA
[ENA]
¢þ
>WENV182786617
OJSJ01000119
[OJSJ] human gut metagenome; human gut
61580
61665
+
Tyr
GTA
[ENA]
¢þ
>WENV182787530
OJSK01000272
[OJSK] human gut metagenome; human gut
2184
2099
-
Tyr
GTA
[ENA]
¢þ
>WENV182788930
OJSL01001595
[OJSL] human gut metagenome; human gut
10364
10449
+
Tyr
GTA
[ENA]
¢þ
>WENV182790558
OJSM01026986
[OJSM] human gut metagenome; human gut
1113
1198
+
Tyr
GTA
[ENA]
¢þ
>WENV182791820
OJSN01025901
[OJSN] human gut metagenome; human gut
361
276
-
Tyr
GTA
[ENA]
¢þ
>WENV182793722
OJSP01001181
[OJSP] human gut metagenome; human gut
4050
3965
-
Tyr
GTA
[ENA]
¢þ
>WENV182795574
OJSQ01001131
[OJSQ] human gut metagenome; human gut
29599
29514
-
Tyr
GTA
[ENA]
¢þ
>WENV182801132
OJUG01000268
[OJUG] human gut metagenome; human gut
12245
12160
-
Tyr
GTA
[ENA]
¢þ
>WENV182871642
OKRV01000058
[OKRV] human gut metagenome; faeces
12183
12098
-
Tyr
GTA
[ENA]
¢þ
>WENV182875364
OKRX01000895
[OKRX] human gut metagenome; faeces
2002
1917
-
Tyr
GTA
[ENA]
¢þ
>WENV182890217
OKSF01010671
[OKSF] human gut metagenome; faeces
710
625
-
Tyr
GTA
[ENA]
¢þ
>WENV182926719
OKUM01001118
[OKUM] human gut metagenome; feces
2014
1929
-
Tyr
GTA
[ENA]
¢þ
>WENV182929312
OKUQ01000444
[OKUQ] human gut metagenome; feces
17647
17732
+
Tyr
GTA
[ENA]
¢þ
>WENV182940901
OKVG01000117
[OKVG] human gut metagenome; human gut
955
870
-
Tyr
GTA
[ENA]
¢þ
>WENV182943603
OKVI01000234
[OKVI] human gut metagenome; human gut
55514
55599
+
Tyr
GTA
[ENA]
¢þ
>WENV183023487
OLFS01001263
[OLFS] human gut metagenome; faeces
5066
4981
-
Tyr
GTA
[ENA]
¢þ
>WENV183027875
OLFV01000494
[OLFV] human gut metagenome; faeces
11841
11756
-
Tyr
GTA
[ENA]
¢þ
>WENV183029426
OLFW01000258
[OLFW] human gut metagenome; faeces
878
793
-
Tyr
GTA
[ENA]
¢þ
>WENV183032814
OLFY01000669
[OLFY] human gut metagenome; faeces
878
793
-
Tyr
GTA
[ENA]
¢þ
>WENV183053092
OLGL01002791
[OLGL] human gut metagenome; faeces
12322
12407
+
Tyr
GTA
[ENA]
¢þ
>WENV183080638
OLIY01006866
[OLIY] human gut metagenome; human gut
813
728
-
Tyr
GTA
[ENA]
¢þ
>WENV183089179
OLJW01002715
[OLJW] human gut metagenome; human gut
12245
12160
-
Tyr
GTA
[ENA]
¢þ
>WENV183091398
OLKG01000483
[OLKG] human gut metagenome; human gut
27947
27862
-
Tyr
GTA
[ENA]
¢þ
>WENV183269979
OLRV01002470
[OLRV] human gut metagenome; faeces
10093
10008
-
Tyr
GTA
[ENA]
¢þ
>WENV183326908
OLVZ01092542
[OLVZ] human gut metagenome; faeces
86
171
+
Tyr
GTA
[ENA]
¢þ
>WENV183332521
OLWD01001008
[OLWD] human gut metagenome; feces
1840
1755
-
Tyr
GTA
[ENA]
¢þ
>WENV183349423
OLWW01000335
[OLWW] human gut metagenome; feces
4976
4891
-
Tyr
GTA
[ENA]
¢þ
>WENV183394563
OLZG01003116
[OLZG] human gut metagenome; feces
4595
4680
+
Tyr
GTA
[ENA]
¢þ
>WENV183465682
OMEB01000436
[OMEB] human gut metagenome; feces
20631
20716
+
Tyr
GTA
[ENA]
¢þ
>WENV183469336
OMEI01003115
[OMEI] human gut metagenome; feces
4034
4119
+
Tyr
GTA
[ENA]
¢þ
>WENV183485571
OMFQ01000266
[OMFQ] human gut metagenome; feces
15102
15017
-
Tyr
GTA
[ENA]
¢þ
>WENV183527365
ONZW01000318
[ONZW] human gut metagenome; human gut
41285
41370
+
Tyr
GTA
[ENA]
¢þ
>WENV183580692
OOCN01000262
[OOCN] human gut metagenome; human gut
1833
1748
-
Tyr
GTA
[ENA]
¢þ
>WENV183608697
OODQ01000068
[OODQ] human gut metagenome; human gut
69395
69310
-
Tyr
GTA
[ENA]
¢þ
>WENV183637373
OQVH01000044
[OQVH] human gut metagenome; human gut
56172
56087
-
Tyr
GTA
[ENA]
¢þ
>WENV183789249
PPYF01384856
[PPYF] human gut metagenome; stool from patient with Crohn's disease
54171
54256
+
Tyr
GTA
[ENA]
¢þ
>WENV170076307
CDZT01063783
[CDZT] gut metagenome; human stools
21228
21313
+
Tyr
GTA
[ENA]
¢þ
>WENV170077006
CDZU01018947
[CDZU] gut metagenome; human stools
12519
12604
+
Tyr
GTA
[ENA]
¢þ
>WENV170777077
LXOW01242786
[LXOW] bovine gut metagenome; Cow rumen
239
324
+
Tyr
GTA
[ENA]
¢þ
>C181156436
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
1296691
1296776
+
Tyr
GTA
-
¡û
>C181156502
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
1123258
1123343
+
Tyr
GTA
-
¡û
>C181178704
CP029462
Bacillota
Megasphaera stantonii AJH120 [CP029462]
904591
904506
-
Tyr
GTA
-
¡û
>W141559868
JHXC01000021
Bacillota
Megasphaera elsdenii T81 [JHXC]
12471
12386
-
Tyr
GTA
[ENA]
¡û
>W1911179393
NQMW01000003
Bacillota
Megasphaera elsdenii indica [NQMW]
101307
101392
+
Tyr
GTA
[ENA]
¡û
>W1911192111
NQXW01000026
Bacillota
Megasphaera sp. ASD88 [NQXW]
1162
1077
-
Tyr
GTA
[ENA]
¡û
>W1810272719
PSNP01000016
Bacillota
Megasphaera stantonii AJH120 [PSNP]
115904
115819
-
Tyr
GTA
[ENA]
¡û
>W1511353894
JRPS01000013
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
111495
111580
+
Tyr
GTA
[ENA]
¡û
>W1511656931
LEKT01000045
Bacillota
Megasphaera cerevisiae DSM 20462 [LEKT]
841
756
-
Tyr
GTA
[ENA]
¡û
>C161021135
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
894246
894331
+
Tyr
GTA
-
¡û
>C161104345
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
857426
857511
+
Tyr
GTA
[Ensembl]
¡û
>W1610896724
LRVC01000085
Bacillota
Megasphaera sp. MJR8396C [LRVC]
777
692
-
Tyr
GTA
[ENA]
¡û
>W1610931753
LUGJ01000030
Bacillota
Megasphaera sp. DISK 18 [LUGJ]
4632
4547
-
Tyr
GTA
[ENA]
¡û
>WENV083034
BAAX01000553
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
2519
2606
+
Tyr
GTA
[ENA]
>WENV086839
BABG01013097
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
1016
1103
+
Tyr
GTA
[ENA]
>W1710523029
FNHQ01000011
Bacillota
Megasphaera paucivorans [FNHQ]
1127
1042
-
Tyr
GTA
[ENA]
¡û
>W1710564601
FOQP01000008
Bacillota
Megasphaera elsdenii [FOQP]
55373
55458
+
Tyr
GTA
[ENA]
¡û
>W1710589786
FRAK01000016
Bacillota
Megasphaera elsdenii [FRAK]
47926
48011
+
Tyr
GTA
[ENA]
¡û
>W1710601272
FUXD01000011
Bacillota
Megasphaera cerevisiae DSM 20462 [FUXD]
81428
81513
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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