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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101030 (16 seq.)
>W131230537
AUHR01000023
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
17423
17507
+
Leu
TAG
[ENA]
¡û
>W1711421812
MHZW01000019
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_20 [MHZW]
4799
4883
+
Leu
TAG
[ENA]
¡û
>C171094902
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
1015563
1015647
+
Leu
TAG
-
¡û
>WENV180284746
OBID01103457
[OBID] metagenome; sludge
165
249
+
Leu
TAG
[ENA]
¢þ
>WENV180371090
OBOI01000324
[OBOI] sediment metagenome; sediment
5430
5514
+
Leu
TAG
[ENA]
¢þ
>WENV181169052
OEIV010000181
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
28619
28703
+
Leu
TAG
[ENA]
¢þ
>WENV181378605
OFRB01033188
[OFRB] wastewater metagenome; Exp Tend CN 0WW
528
444
-
Leu
TAG
[ENA]
¢þ
>WENV181381892
OFRF01023412
[OFRF] wastewater metagenome; Exp Tend CN 50WW
704
620
-
Leu
TAG
[ENA]
¢þ
>WENV170651632
JRYG01000043
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
5258
5342
+
Leu
TAG
[ENA]
¢þ
>WENV170653456
JRYJ01001295
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
2189
2105
-
Leu
TAG
[ENA]
¢þ
>C181058424
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
835987
836071
+
Leu
TAG
-
¡û
>C191004288
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
1274487
1274571
+
Leu
TAG
-
¡û
>C191007517
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1241642
1241726
+
Leu
TAG
-
¡û
>W1910128404
BHVV01000008
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
326680
326596
-
Leu
TAG
[ENA]
¡û
>C09107021
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
831029
831113
+
Leu
TAG
[Ensembl]
¡û
>W1810659718
QJKI01000001
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
198066
197982
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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