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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101065 (110 seq.)
>W1710776344
LIZN01000009
Actinomycetota
Thermobifida halotolerans [LIZN]
17388
17471
+
Leu
CAG
[ENA]
¡û
>W1711183485
LWLB01000007
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
91857
91774
-
Leu
CAG
[ENA]
¡û
>W1711613602
MOYN01000052
Actinomycetota
Thermomonospora sp. CIF 1 [MOYN]
18353
18270
-
Leu
CAG
[ENA]
¡û
>W1712061753
NGFP01000075
Actinomycetota
Streptosporangium minutum M26 [NGFP]
25683
25600
-
Leu
CAG
[ENA]
¡û
>C171066456
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
9981067
9980984
-
Leu
CAG
-
¡û
>W131053541
ANAD01000142
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
6652
6569
-
Leu
CAG
[ENA]
¡û
>W131054273
ANAS01000005
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
529260
529177
-
Leu
CAG
[ENA]
¡û
>W131054617
ANAW01000273
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
18721
18804
+
Leu
CAG
[ENA]
¡û
>W131054726
ANAY01000039
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
34339
34256
-
Leu
CAG
[ENA]
¡û
>W131054836
ANBA01000027
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
106929
106846
-
Leu
CAG
[ENA]
¡û
>W131054877
ANBB01000057
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
20364
20447
+
Leu
CAG
[ENA]
¡û
>W131054945
ANBC01000772
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
12910
12995
+
Leu
CAG
[ENA]
¡û
>W131054999
ANBD01000161
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
19271
19354
+
Leu
CAG
[ENA]
¡û
>W131055059
ANBE01000048
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
42860
42775
-
Leu
CAG
[ENA]
¡û
>W131055124
ANBF01000194
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
10336
10251
-
Leu
CAG
[ENA]
¡û
>W131055210
ANBH01000256
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
41157
41074
-
Leu
CAG
[ENA]
¡û
>W131165730
ARBV01000003
Actinomycetota
Nonomuraea coxensis DSM 45129 [ARBV]
29766
29851
+
Leu
CAG
[ENA]
¡û
>W131170536
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
1469176
1469091
-
Leu
CAG
[ENA]
¡û
>W131179350
ARMI01000037
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
19116
19199
+
Leu
CAG
[ENA]
¡û
>WENV180017977
FSXZ01000746
[FSXZ] metagenome; soil
728
645
-
Leu
CAG
[ENA]
¢þ
>WENV180018033
FSXZ01002436
[FSXZ] metagenome; soil
5
88
+
Leu
CAG
[ENA]
¢þ
>WENV180320902
OBKQ01051081
[OBKQ] soil metagenome; Clay
380
297
-
Leu
CAG
[ENA]
¢þ
>WENV180342360
OBLJ01010326
[OBLJ] soil metagenome; Clay
354
271
-
Leu
CAG
[ENA]
¢þ
>WENV180343708
OBLK01065717
[OBLK] soil metagenome; Clay
122
37
-
Leu
CAG
[ENA]
¢þ
>WENV181191674
OEPS010160769
[OEPS] soil metagenome; soil
130
47
-
Leu
CAG
[ENA]
¢þ
>WENV181192481
OEPS010701177
[OEPS] soil metagenome; soil
154
237
+
Leu
CAG
[ENA]
¢þ
>WENV181193036
OEPS011372853
[OEPS] soil metagenome; soil
192
109
-
Leu
CAG
[ENA]
¢þ
>WENV181285779
OFGT01015942
[OFGT] soil metagenome; Clay
241
325
+
Leu
CAG
[ENA]
¢þ
>WENV181285835
OFGU01000851
[OFGU] soil metagenome; Clay
3127
3210
+
Leu
CAG
[ENA]
¢þ
>WENV181286120
OFGV01000175
[OFGV] soil metagenome; Clay
1033
950
-
Leu
CAG
[ENA]
¢þ
>WENV181291800
OFHD01001378
[OFHD] soil metagenome; Clay
2627
2710
+
Leu
CAG
[ENA]
¢þ
>WENV181292592
OFHF01000951
[OFHF] soil metagenome; Clay
2908
2991
+
Leu
CAG
[ENA]
¢þ
>WENV181293304
OFHG01001151
[OFHG] soil metagenome; Clay
1091
1008
-
Leu
CAG
[ENA]
¢þ
>WENV181294392
OFHH01001127
[OFHH] soil metagenome; Clay
4153
4236
+
Leu
CAG
[ENA]
¢þ
>WENV181296723
OFHK01000020
[OFHK] soil metagenome; Clay
50126
50043
-
Leu
CAG
[ENA]
¢þ
>WENV181297215
OFHK01017409
[OFHK] soil metagenome; Clay
155
72
-
Leu
CAG
[ENA]
¢þ
>W141140041
AWOO02000011
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
102860
102945
+
Leu
CAG
[ENA]
¡û
>W141219699
AZXF01000024
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
86911
86826
-
Leu
CAG
[ENA]
¡û
>W141236366
BAZE01000017
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
71159
71074
-
Leu
CAG
[ENA]
¡û
>W141275765
JADG01000008
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
79716
79799
+
Leu
CAG
[ENA]
¡û
>WENV170564715
CZKW01000373
[CZKW] soil metagenome genome assembly CiPEHR-AK-2010-FBin.13, contig:; soil
4849
4766
-
Leu
CAG
[ENA]
¢þ
>WENV170564822
CZLB01000084
[CZLB] soil metagenome genome assembly CiPEHR-AK-2010-FBin.9, contig:; soil
2457
2372
-
Leu
CAG
[ENA]
¢þ
>C191089018
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
100547
100630
+
Leu
CAG
-
¡û
>C191151516
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
90483
90566
+
Leu
CAG
-
¡û
>C191212886
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4219962
4220045
+
Leu
CAG
-
¡û
>W09110068
ABUU01000221
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
6487
6570
+
Leu
CAG
[ENA]
¡û
>W09110225
ABUZ01000004
Actinomycetota
Thermomonospora curvata DSM 43183 [ABUZ]
312273
312190
-
Leu
CAG
[ENA]
¡û
>W141760749
JOAG01000010
Actinomycetota
Nonomuraea candida [JOAG]
196912
196827
-
Leu
CAG
[ENA]
¡û
>W141761073
JOAM01000534
Actinomycetota
Nonomuraea kuesteri [JOAM]
1375
1292
-
Leu
CAG
[ENA]
¡û
>W141767398
JOEP01000011
Actinomycetota
Streptosporangium roseum [JOEP]
59891
59974
+
Leu
CAG
[ENA]
¡û
>W141767479
JOEQ01000029
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
38612
38697
+
Leu
CAG
[ENA]
¡û
>W141768689
JOFJ01000011
Actinomycetota
Spirillospora albida [JOFJ]
76629
76546
-
Leu
CAG
[ENA]
¡û
>W1910547202
FZNP01000002
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
739611
739694
+
Leu
CAG
[ENA]
¡û
>W1910547908
FZOD01000085
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
6063
5980
-
Leu
CAG
[ENA]
¡û
>W1910548663
FZOR01000019
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
30798
30715
-
Leu
CAG
[ENA]
¡û
>W1911541324
OOHJ01000018
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
2771859
2771942
+
Leu
CAG
[ENA]
¡û
>W1911676951
QHHZ01000013
Actinomycetota
Nonomuraea sp. WAC 01424 [QHHZ]
290070
290153
+
Leu
CAG
[ENA]
¡û
>W1911709952
QPNC01000031
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
19153
19236
+
Leu
CAG
[ENA]
¡û
>W1911813350
QZEY01000005
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
455872
455955
+
Leu
CAG
[ENA]
¡û
>W1810173926
PJOK01000037
Actinomycetota
Nonomuraea indica DRQ-2 [PJOK]
79086
79003
-
Leu
CAG
[ENA]
¡û
>W1810224066
POUA01000126
Actinomycetota
Spongiactinospora gelatinilytica 7K107 [POUA]
6983
7066
+
Leu
CAG
[ENA]
¡û
>W1810224273
POUD01000366
Actinomycetota
Nonomuraea aridisoli KC333 [POUD]
682
599
-
Leu
CAG
[ENA]
¡û
>W1810356880
PVNG01000018
Actinomycetota
Nonomuraea fuscirosea CGMCC 4.7104 [PVNG]
71011
71094
+
Leu
CAG
[ENA]
¡û
>W1810357004
PVNI01000021
Actinomycetota
Actinomadura viridilutea DSM 44433 [PVNI]
86263
86346
+
Leu
CAG
[ENA]
¡û
>W1810367960
PVZC01000003
Actinomycetota
Allonocardiopsis opalescens DSM 45601 [PVZC]
212665
212748
+
Leu
CAG
[ENA]
¡û
>W1810570533
QEIN01000131
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
4849
4766
-
Leu
CAG
[ENA]
¡û
>W1810698085
QLYX01000005
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
144439
144522
+
Leu
CAG
[ENA]
¡û
>W1810701619
QMEY01000036
Actinomycetota
Spongiactinospora rosea LHW63015 [QMEY]
60391
60308
-
Leu
CAG
[ENA]
¡û
>W1810707278
QNFZ01000285
Actinomycetota
Nonomuraea lactucae NEAU-YG30 [QNFZ]
14551
14466
-
Leu
CAG
[ENA]
¡û
>W1810861291
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
3111676
3111593
-
Leu
CAG
[ENA]
¡û
>W1810888898
QURH01000334
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
1073
1156
+
Leu
CAG
[ENA]
¡û
>W1810913804
QVNQ01000001
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
379993
380076
+
Leu
CAG
[ENA]
¡û
>C10112395
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
119167
119250
+
Leu
CAG
[Ensembl]
¡û
>C10113119
CP001738
Actinomycetota
Thermomonospora curvata DSM 43183 [CP001738]
72822
72905
+
Leu
CAG
[Ensembl]
¡û
>W1510456325
CPWZ01000028
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
40550
40635
+
Leu
CAG
[ENA]
¡û
>W1511352749
JROO01000017
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
22698
22783
+
Leu
CAG
[ENA]
¡û
>W1511568503
LAJC01000013
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
32387
32470
+
Leu
CAG
[ENA]
¡û
>W1511584484
LAVL01000005
Actinomycetota
Nonomuraea sp. SBT364 [LAVL]
145700
145615
-
Leu
CAG
[ENA]
¡û
>W1511697708
LGEC01000087
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
95825
95742
-
Leu
CAG
[ENA]
¡û
>W1610057819
BBZG01000002
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
239475
239558
+
Leu
CAG
[ENA]
¡û
>W1610067494
BCQP01000091
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
17640
17725
+
Leu
CAG
[ENA]
¡û
>W1610067530
BCQQ01000058
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
9357
9440
+
Leu
CAG
[ENA]
¡û
>W1610067617
BCQR01000248
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
2301
2384
+
Leu
CAG
[ENA]
¡û
>W1610067618
BCQR01000248
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
2888
2971
+
Leu
CAG
[ENA]
¡û
>W1610067691
BCQT01000002
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
370369
370286
-
Leu
CAG
[ENA]
¡û
>W1610067786
BCQU01000068
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
34780
34697
-
Leu
CAG
[ENA]
¡û
>W1610068771
BCRO01000105
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
17232
17315
+
Leu
CAG
[ENA]
¡û
>W1610081013
BDCX01000012
Actinomycetota
Planomonospora sphaerica [BDCX]
58382
58299
-
Leu
CAG
[ENA]
¡û
>W1610526103
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
62690
62773
+
Leu
CAG
[ENA]
¡û
>W1610640450
LIZN01000009
Actinomycetota
Thermobifida halotolerans [LIZN]
17388
17471
+
Leu
CAG
[ENA]
¡û
>W1710054518
BBZG01000002
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
239475
239558
+
Leu
CAG
[ENA]
¡û
>W1710064867
BCQP01000091
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
17640
17725
+
Leu
CAG
[ENA]
¡û
>W1710064903
BCQQ01000058
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
9357
9440
+
Leu
CAG
[ENA]
¡û
>W1710064990
BCQR01000248
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
2301
2384
+
Leu
CAG
[ENA]
¡û
>W1710064991
BCQR01000248
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
2888
2971
+
Leu
CAG
[ENA]
¡û
>W1710065064
BCQT01000002
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
370369
370286
-
Leu
CAG
[ENA]
¡û
>W1710065159
BCQU01000068
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
34780
34697
-
Leu
CAG
[ENA]
¡û
>W1710066144
BCRO01000105
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
17232
17315
+
Leu
CAG
[ENA]
¡û
>W1710079664
BDCX01000012
Actinomycetota
Planomonospora sphaerica [BDCX]
58382
58299
-
Leu
CAG
[ENA]
¡û
>W1710516372
FNCN01000024
Actinomycetota
Sinosporangium album [FNCN]
65848
65931
+
Leu
CAG
[ENA]
¡û
>W1710517525
FNDJ01000036
Actinomycetota
Nonomuraea jiangxiensis [FNDJ]
17764
17681
-
Leu
CAG
[ENA]
¡û
>W1710519866
FNFB01000019
Actinomycetota
Nonomuraea maritima [FNFB]
84452
84369
-
Leu
CAG
[ENA]
¡û
>W1710526550
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
1771811
1771894
+
Leu
CAG
[ENA]
¡û
>W1710539622
FNVO01000011
Actinomycetota
Thermomonospora echinospora [FNVO]
76122
76205
+
Leu
CAG
[ENA]
¡û
>W1710539872
FNVT01000004
Actinomycetota
Nonomuraea solani [FNVT]
469297
469214
-
Leu
CAG
[ENA]
¡û
>W1710545073
FOBF01000005
Actinomycetota
Nonomuraea pusilla [FOBF]
14584
14667
+
Leu
CAG
[ENA]
¡û
>W1710553786
FOHX01000004
Actinomycetota
Nonomuraea wenchangensis [FOHX]
100119
100202
+
Leu
CAG
[ENA]
¡û
>W1710565050
FOQY01000009
Actinomycetota
Streptosporangium canum [FOQY]
37152
37069
-
Leu
CAG
[ENA]
¡û
>W1710570697
FOVH01000025
Actinomycetota
Actinomadura madurae [FOVH]
87820
87905
+
Leu
CAG
[ENA]
¡û
>W1710627341
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
62690
62773
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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