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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101138 (26 seq.)
>W1710885542
LMXH01000001
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
697055
697139
+
Leu
CAA
[ENA]
¡û
>C171098066
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
329741
329823
+
Leu
CAA
-
¡û
>C171100032
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
1567717
1567635
-
Leu
CAA
-
¡û
>C171104990
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
1244844
1244762
-
Leu
CAA
-
¡û
>C171109172
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
1332814
1332732
-
Leu
CAA
-
¡û
>W131000495
AGEN01000016
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
37888
37806
-
Leu
CAA
[ENA]
¡û
>w017318
AARF01000175
Bacillota
Paenibacillus larvae subsp. larvae BRL-230010 [AARF]
1059
1144
+
Leu
CAA
[ENA]
¡û
>W141001013
ADFW01000002
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
598683
598765
+
Leu
CAA
[ENA]
¡û
>W141220216
AZXQ01000004
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
1163273
1163188
-
Leu
CAA
[ENA]
¡û
>W141237903
BBJT01000011
Bacillota
Paenibacillus chitinolyticus NBRC 15660 [BBJT]
187374
187289
-
Leu
CAA
[ENA]
¡û
>WENV170998123
MWWI01019289
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
88
173
+
Leu
CAA
[ENA]
¢þ
>C181038510
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
2895804
2895722
-
Leu
CAA
-
¡û
>C181038584
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
3052368
3052286
-
Leu
CAA
-
¡û
>C181038661
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
3671099
3671017
-
Leu
CAA
-
¡û
>C181038738
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
3450575
3450493
-
Leu
CAA
-
¡û
>C191007699
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5172747
5172662
-
Leu
CAA
-
¡û
>C191007714
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5159740
5159655
-
Leu
CAA
-
¡û
>C191044871
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
5708805
5708723
-
Leu
CAA
-
¡û
>C191106128
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
221678
221763
+
Leu
CAA
-
¡û
>C141001469
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
3075449
3075367
-
Leu
CAA
[Ensembl]
¡û
>W11130173
ADZY01000006
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
38805
38723
-
Leu
CAA
[ENA]
¡û
>W1511499749
JXAL01000013
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
1733
1818
+
Leu
CAA
[ENA]
¡û
>W1511585036
LAWY01000040
Bacillota
Paenibacillus larvae MEX14 [LAWY]
1564
1646
+
Leu
CAA
[ENA]
¡û
>W11158466
AFDH01000043
Bacillota
Paenibacillus sp. HGF7 [AFDH]
1510
1592
+
Leu
CAA
[ENA]
¡û
>W1610747468
LMXH01000001
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
697055
697139
+
Leu
CAA
[ENA]
¡û
>W1710539284
FNVF01000005
Bacillota
Paenibacillus sp. UNC499MF [FNVF]
373519
373437
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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