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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101147 (114 seq.)
>W1710926772
LOEL01000056
Bacteroidota
Porphyromonas gingivalis [LOEL]
21542
21457
-
Leu
CAG
[ENA]
¡û
>W131111428
APMB01000065
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
10734
10819
+
Leu
CAG
[ENA]
¡û
>W131175790
ARJN01000037
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
16244
16329
+
Leu
CAG
[ENA]
¡û
>W1712084893
NHRU01000034
Bacteroidota
Porphyromonas gingivalis [NHRU]
649
734
+
Leu
CAG
[ENA]
¡û
>C016377
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
2324224
2324139
-
Leu
CAG
[Ensembl]
¡û
>WENV180698131
ODDE01041892
[ODDE] human metagenome; G_DNA_Supragingival plaque
230
313
+
Leu
CAG
[ENA]
¢þ
>WENV180722148
ODGL01112052
[ODGL] human metagenome; G_DNA_Subgingival plaque
106
23
-
Leu
CAG
[ENA]
¢þ
>WENV180750074
ODHS01000373
[ODHS] human metagenome; G_DNA_Supragingival plaque
16930
16847
-
Leu
CAG
[ENA]
¢þ
>W141074442
ASYL01000095
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
451
536
+
Leu
CAG
[ENA]
¡û
>WENV180765296
ODIB01073420
[ODIB] human metagenome; G_DNA_Supragingival plaque
22
105
+
Leu
CAG
[ENA]
¢þ
>WENV180782654
ODIQ01000093
[ODIQ] human metagenome; G_DNA_Tongue dorsum
11278
11361
+
Leu
CAG
[ENA]
¢þ
>WENV180808600
ODJK01000271
[ODJK] human metagenome; G_DNA_Subgingival plaque
6398
6481
+
Leu
CAG
[ENA]
¢þ
>WENV180823654
ODJW01093523
[ODJW] human metagenome; G_DNA_Supragingival plaque
39
122
+
Leu
CAG
[ENA]
¢þ
>WENV180824386
ODJX01004984
[ODJX] human metagenome; G_DNA_Supragingival plaque
218
135
-
Leu
CAG
[ENA]
¢þ
>WENV180830854
ODKB01015685
[ODKB] human metagenome; G_DNA_Tongue dorsum
248
331
+
Leu
CAG
[ENA]
¢þ
>WENV180834691
ODKD01112911
[ODKD] human metagenome; G_DNA_Supragingival plaque
153
236
+
Leu
CAG
[ENA]
¢þ
>WENV180842550
ODKM01055047
[ODKM] human metagenome; G_DNA_Buccal mucosa
258
341
+
Leu
CAG
[ENA]
¢þ
>WENV180845451
ODKT01000441
[ODKT] human metagenome; G_DNA_Supragingival plaque
1782
1865
+
Leu
CAG
[ENA]
¢þ
>WENV180888227
ODMN01000257
[ODMN] human metagenome; G_DNA_Supragingival plaque
16253
16170
-
Leu
CAG
[ENA]
¢þ
>WENV180897728
ODNI01065805
[ODNI] human metagenome; G_DNA_Tongue dorsum
251
168
-
Leu
CAG
[ENA]
¢þ
>WENV180987217
ODVK01008456
[ODVK] human metagenome; G_DNA_Supragingival plaque
608
525
-
Leu
CAG
[ENA]
¢þ
>WENV180998728
ODVT01001634
[ODVT] human metagenome; G_DNA_Buccal mucosa
217
134
-
Leu
CAG
[ENA]
¢þ
>WENV181005972
ODWA01000268
[ODWA] human metagenome; G_DNA_Buccal mucosa
10011
9928
-
Leu
CAG
[ENA]
¢þ
>WENV181027429
ODXD01001893
[ODXD] human metagenome; G_DNA_Buccal mucosa
1928
1845
-
Leu
CAG
[ENA]
¢þ
>WENV181050470
ODYD01020209
[ODYD] human metagenome; G_DNA_Supragingival plaque
184
267
+
Leu
CAG
[ENA]
¢þ
>WENV181074630
OEAO01016748
[OEAO] human metagenome; G_DNA_Tongue dorsum
1686
1603
-
Leu
CAG
[ENA]
¢þ
>WENV181078123
OEAQ01006012
[OEAQ] human metagenome; G_DNA_Buccal mucosa
302
385
+
Leu
CAG
[ENA]
¢þ
>WENV181079385
OEAS01005590
[OEAS] human metagenome; G_DNA_Supragingival plaque
2692
2775
+
Leu
CAG
[ENA]
¢þ
>WENV181085189
OEAX01002654
[OEAX] human metagenome; G_DNA_Tongue dorsum
5641
5724
+
Leu
CAG
[ENA]
¢þ
>WENV181106722
OEEI01000062
[OEEI] human metagenome; G_DNA_Supragingival plaque
404
487
+
Leu
CAG
[ENA]
¢þ
>WENV181113427
OEEL01026265
[OEEL] human metagenome; G_DNA_Tongue dorsum
885
802
-
Leu
CAG
[ENA]
¢þ
>WENV181156459
OEIE01018343
[OEIE] human metagenome; G_DNA_Supragingival plaque
617
700
+
Leu
CAG
[ENA]
¢þ
>WENV181158722
OEIH01007473
[OEIH] human metagenome; G_DNA_Supragingival plaque
1515
1598
+
Leu
CAG
[ENA]
¢þ
>WENV181181686
OEJV01000070
[OEJV] human metagenome; G_DNA_Supragingival plaque
53364
53281
-
Leu
CAG
[ENA]
¢þ
>WENV181182462
OEJV01010870
[OEJV] human metagenome; G_DNA_Supragingival plaque
461
544
+
Leu
CAG
[ENA]
¢þ
>W141145655
AWUU01000176
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
421
506
+
Leu
CAG
[ENA]
¡û
>W141145697
AWUV01000172
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
10719
10804
+
Leu
CAG
[ENA]
¡û
>W141145731
AWUW01000119
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
10709
10794
+
Leu
CAG
[ENA]
¡û
>W141145960
AWVC01000101
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
34564
34479
-
Leu
CAG
[ENA]
¡û
>W141146014
AWVD01000219
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
421
506
+
Leu
CAG
[ENA]
¡û
>W141146051
AWVE01000094
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
10899
10984
+
Leu
CAG
[ENA]
¡û
>WENV182005082
OHBE01001835
[OHBE] human gut metagenome; faeces
13828
13744
-
Leu
CAG
[ENA]
¢þ
>C08007291
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
2335614
2335529
-
Leu
CAG
[Ensembl]
¡û
>WENV183507935
OMGZ01001187
[OMGZ] human oral metagenome; human oral
713
629
-
Leu
CAG
[ENA]
¢þ
>WENV183508011
OMHA01001634
[OMHA] human oral metagenome; human oral
747
663
-
Leu
CAG
[ENA]
¢þ
>WENV183510891
OMHT01000043
[OMHT] human oral metagenome; human oral
7385
7301
-
Leu
CAG
[ENA]
¢þ
>C181102082
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
1331456
1331540
+
Leu
CAG
-
¡û
>C181102142
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
2324375
2324459
+
Leu
CAG
-
¡û
>C181102196
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
1165642
1165558
-
Leu
CAG
-
¡û
>C181102257
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
83231
83147
-
Leu
CAG
-
¡û
>C181102285
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
2125477
2125561
+
Leu
CAG
-
¡û
>C181102345
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1090297
1090213
-
Leu
CAG
-
¡û
>C181102393
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
908782
908698
-
Leu
CAG
-
¡û
>C181102420
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
995742
995826
+
Leu
CAG
-
¡û
>C181102473
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1108350
1108434
+
Leu
CAG
-
¡û
>C181102511
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
182775
182859
+
Leu
CAG
-
¡û
>C181102584
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
1633010
1632926
-
Leu
CAG
-
¡û
>C181123595
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
2360602
2360518
-
Leu
CAG
-
¡û
>C181123647
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
2315575
2315491
-
Leu
CAG
-
¡û
>C181123699
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
2324747
2324663
-
Leu
CAG
-
¡û
>W1910371013
FUFB01000014
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
34745
34661
-
Leu
CAG
[ENA]
¡û
>W1910371062
FUFC01000016
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
34639
34555
-
Leu
CAG
[ENA]
¡û
>W1910371091
FUFD01000011
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
52136
52220
+
Leu
CAG
[ENA]
¡û
>W1910371170
FUFE01000089
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
13943
13859
-
Leu
CAG
[ENA]
¡û
>W1910371207
FUFF01000018
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
34615
34531
-
Leu
CAG
[ENA]
¡û
>W1910371243
FUFG01000035
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
53226
53310
+
Leu
CAG
[ENA]
¡û
>W1910371296
FUFH01000070
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
22179
22095
-
Leu
CAG
[ENA]
¡û
>W1910371308
FUFI01000005
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
22235
22151
-
Leu
CAG
[ENA]
¡û
>W1910371356
FUFJ01000028
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
11172
11256
+
Leu
CAG
[ENA]
¡û
>W1910372585
FUGF01000058
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
75705
75789
+
Leu
CAG
[ENA]
¡û
>W1910372623
FUGG01000047
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
34465
34381
-
Leu
CAG
[ENA]
¡û
>W1911247373
NSLL01000010
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
21782
21698
-
Leu
CAG
[ENA]
¡û
>W1911247416
NSLM01000007
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
52165
52249
+
Leu
CAG
[ENA]
¡û
>W1911247455
NSLN01000013
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
3454
3370
-
Leu
CAG
[ENA]
¡û
>W1911247508
NSLO01000016
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
34658
34574
-
Leu
CAG
[ENA]
¡û
>W1911247534
NSLP01000002
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
34638
34554
-
Leu
CAG
[ENA]
¡û
>W1911247578
NSLQ01000004
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
52164
52248
+
Leu
CAG
[ENA]
¡û
>W1911247648
NSLR01000040
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
892
976
+
Leu
CAG
[ENA]
¡û
>W1911247677
NSLS01000008
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
53706
53790
+
Leu
CAG
[ENA]
¡û
>W1911247707
NSLT01000002
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
54490
54574
+
Leu
CAG
[ENA]
¡û
>W1911247748
NSLU01000012
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
22013
21929
-
Leu
CAG
[ENA]
¡û
>W1911247811
NSLV01000019
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
22112
22028
-
Leu
CAG
[ENA]
¡û
>W1911247858
NSLW01000009
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
35576
35492
-
Leu
CAG
[ENA]
¡û
>W1911247878
NSLX01000002
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
125641
125725
+
Leu
CAG
[ENA]
¡û
>W1911709126
QPGS01000018
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
21855
21771
-
Leu
CAG
[ENA]
¡û
>W1810573732
QEKY01000012
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
41093
41009
-
Leu
CAG
[ENA]
¡û
>C151089047
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
2347777
2347692
-
Leu
CAG
-
¡û
>C151089095
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
2353242
2353157
-
Leu
CAG
-
¡û
>C11117313
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
2320593
2320508
-
Leu
CAG
[Ensembl]
¡û
>W1511328372
JQJE01000033
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
132944
132859
-
Leu
CAG
[ENA]
¡û
>W1511336108
JQZY01000002
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
15285
15370
+
Leu
CAG
[ENA]
¡û
>W1511336384
JRAE01000086
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
35368
35283
-
Leu
CAG
[ENA]
¡û
>W1511336423
JRAF01000064
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
86174
86089
-
Leu
CAG
[ENA]
¡û
>W1511336464
JRAG01000036
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
53037
53122
+
Leu
CAG
[ENA]
¡û
>W1511336531
JRAI01000015
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
15280
15365
+
Leu
CAG
[ENA]
¡û
>W1511336574
JRAJ01000008
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
15153
15238
+
Leu
CAG
[ENA]
¡û
>W1511336615
JRAK01000050
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
7335
7250
-
Leu
CAG
[ENA]
¡û
>W1511336664
JRAL01000017
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
15747
15832
+
Leu
CAG
[ENA]
¡û
>W1511336816
JRAQ01000008
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
71656
71571
-
Leu
CAG
[ENA]
¡û
>W1511336878
JRAR01000053
Bacteroidota
Porphyromonas sp. COT-290 OH860 [JRAR]
103731
103646
-
Leu
CAG
[ENA]
¡û
>W1511336955
JRAT01000022
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
86148
86063
-
Leu
CAG
[ENA]
¡û
>W1511343884
JRFC01000014
Bacteroidota
Porphyromonas sp. COT-290 OH3588 [JRFC]
199427
199342
-
Leu
CAG
[ENA]
¡û
>W1511343936
JRFD01000036
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
15845
15930
+
Leu
CAG
[ENA]
¡û
>C161018168
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
473788
473703
-
Leu
CAG
[Ensembl]
¡û
>C161046936
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
2359600
2359515
-
Leu
CAG
-
¡û
>C161051783
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
2229723
2229638
-
Leu
CAG
-
¡û
>W121073558
AJZS01000053
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
11084
11169
+
Leu
CAG
[ENA]
¡û
>W1610060520
BCBV01000005
Bacteroidota
Porphyromonas gingivalis [BCBV]
465
550
+
Leu
CAG
[ENA]
¡û
>W1610784265
LOEL01000056
Bacteroidota
Porphyromonas gingivalis [LOEL]
21542
21457
-
Leu
CAG
[ENA]
¡û
>W1710017879
ASYM01000060
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
448
533
+
Leu
CAG
[ENA]
¡û
>W1710017931
ASYN01000120
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
21764
21679
-
Leu
CAG
[ENA]
¡û
>W1710017979
ASYO01000084
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
314
229
-
Leu
CAG
[ENA]
¡û
>W1710018030
ASYP01000127
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
34595
34510
-
Leu
CAG
[ENA]
¡û
>W1710057775
BCBV01000005
Bacteroidota
Porphyromonas gingivalis [BCBV]
465
550
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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