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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.101206 (5 seq.)
>W1711386121
MEEX01000028
Alphaproteobacteria
Phenylobacterium sp. SCN 70-31 [MEEX]
95757
95841
+
Leu
CAA
[ENA]
¡û
>WENV181227350
OFDN01007629
[OFDN] hot springs metagenome; Water
2645
2561
-
Leu
CAA
[ENA]
¢þ
>C08007903
CP000747
Alphaproteobacteria
Phenylobacterium zucineum HLK1 [CP000747]
3241457
3241376
-
Leu
CAA
[Ensembl]
¡û
>W1910743284
MHXO01000331
Alphaproteobacteria
Phenylobacterium sp. RIFCSPHIGHO2_01_FULL_70_10 [MHXO]
3732
3648
-
Leu
CAA
[ENA]
¡û
>W1510019401
BBWU01000016
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
11585
11669
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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